Result of FASTA (ccds) for
pFN21AE3619
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3619, 194 aa
1>>>pF1KE3619 194 - 194 aa - 194 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0336+/-0.000732; mu= 14.5219+/- 0.044
mean_var=58.4691+/-11.677, 0's: 0 Z-trim(108.4): 21 B-trim: 84 in 1/50
Lambda= 0.167730
statistics sampled from 10170 (10189) to 10170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.313), width: 16
Scan time: 1.840
The best scores are: opt bits E(32554)
CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 ( 194) 1315 326.0 9e-90
CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 ( 186) 1265 313.9 3.8e-86
CCDS82767.1 NME6 gene_id:10201|Hs108|chr3 ( 141) 990 247.3 3.3e-66
CCDS82768.1 NME6 gene_id:10201|Hs108|chr3 ( 119) 419 109.1 1.1e-24
CCDS77733.1 NME6 gene_id:10201|Hs108|chr3 ( 163) 419 109.1 1.4e-24
CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 ( 212) 353 93.2 1.2e-19
CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 ( 340) 317 84.6 7.3e-17
CCDS1277.1 NME7 gene_id:29922|Hs108|chr1 ( 376) 317 84.6 7.9e-17
CCDS3099.1 NME9 gene_id:347736|Hs108|chr3 ( 263) 278 75.1 4.1e-14
CCDS5452.1 NME8 gene_id:51314|Hs108|chr7 ( 588) 274 74.3 1.6e-13
CCDS10443.1 NME3 gene_id:4832|Hs108|chr16 ( 169) 251 68.5 2.6e-12
CCDS32682.1 NME2 gene_id:654364|Hs108|chr17 ( 267) 245 67.1 1e-11
CCDS11580.1 NME2 gene_id:4831|Hs108|chr17 ( 152) 239 65.6 1.8e-11
CCDS10408.1 NME4 gene_id:4833|Hs108|chr16 ( 187) 231 63.7 8.1e-11
>>CCDS2763.1 NME6 gene_id:10201|Hs108|chr3 (194 aa)
initn: 1315 init1: 1315 opt: 1315 Z-score: 1725.1 bits: 326.0 E(32554): 9e-90
Smith-Waterman score: 1315; 100.0% identity (100.0% similar) in 194 aa overlap (1-194:1-194)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
130 140 150 160 170 180
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
CCDS27 GVHYVAGTGGLGPA
190
>>CCDS77734.1 NME6 gene_id:10201|Hs108|chr3 (186 aa)
initn: 1265 init1: 1265 opt: 1265 Z-score: 1660.0 bits: 313.9 E(32554): 3.8e-86
Smith-Waterman score: 1265; 100.0% identity (100.0% similar) in 186 aa overlap (9-194:1-186)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
120 130 140 150 160 170
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
CCDS77 GVHYVAGTGGLGPA
180
>>CCDS82767.1 NME6 gene_id:10201|Hs108|chr3 (141 aa)
initn: 990 init1: 990 opt: 990 Z-score: 1302.2 bits: 247.3 E(32554): 3.3e-66
Smith-Waterman score: 990; 100.0% identity (100.0% similar) in 141 aa overlap (54-194:1-141)
30 40 50 60 70 80
pF1KE3 ALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQRFYREHEGRFFYQRLVEF
::::::::::::::::::::::::::::::
CCDS82 MRELLWRKEDCQRFYREHEGRFFYQRLVEF
10 20 30
90 100 110 120 130 140
pF1KE3 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVV
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGVHYVAGTGGLGPA
100 110 120 130 140
>>CCDS82768.1 NME6 gene_id:10201|Hs108|chr3 (119 aa)
initn: 798 init1: 419 opt: 419 Z-score: 556.6 bits: 109.1 E(32554): 1.1e-24
Smith-Waterman score: 668; 64.0% identity (64.0% similar) in 186 aa overlap (9-194:1-119)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::
CCDS82 KEDCQRFYREHE------------------------------------------------
60
130 140 150 160 170 180
pF1KE3 DSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
:::::::::::::::::::::::::::::::::::::::::
CCDS82 -------------------DSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEG
70 80 90 100
190
pF1KE3 GVHYVAGTGGLGPA
::::::::::::::
CCDS82 GVHYVAGTGGLGPA
110
>>CCDS77733.1 NME6 gene_id:10201|Hs108|chr3 (163 aa)
initn: 419 init1: 419 opt: 419 Z-score: 554.5 bits: 109.1 E(32554): 1.4e-24
Smith-Waterman score: 419; 100.0% identity (100.0% similar) in 64 aa overlap (9-72:1-64)
10 20 30 40 50 60
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 KEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAP
::::::::::::
CCDS77 KEDCQRFYREHEAGQSEPTSLPTRMPSSSGGRSWDPPECSEHAMWPQILSVGVSASLTPA
60 70 80 90 100 110
>>CCDS4197.1 NME5 gene_id:8382|Hs108|chr5 (212 aa)
initn: 364 init1: 311 opt: 353 Z-score: 466.5 bits: 93.2 E(32554): 1.2e-19
Smith-Waterman score: 353; 41.1% identity (69.5% similar) in 141 aa overlap (16-155:8-145)
10 20 30 40 50
pF1KE3 MTQNLGSEMASILRSPQA-LQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLW
:: .. :::.:::: : . : ... :: . : ::. :.:
CCDS41 MEISMPPPQIYVEKTLAIIKPDIVDKE---EEIQDIILRSGFTIVQRRKLRL
10 20 30 40
60 70 80 90 100 110
pF1KE3 RKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVA
:.:. :: :. :..:. :. .:.:::. :.:::.. ::. : :.::. . :...
CCDS41 SPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKAISYWLELLGPNNSLVAKETH
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 PDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPE
:::.:. .: : ::. :::.. ..: ::: .::.
CCDS41 PDSLRAIYGTDDLRNALHGSNDFAAAEREIRFMFPEVIVEPIPIGQAAKDYLNLHIMPTL
110 120 130 140 150 160
180 190
pF1KE3 GGVHYVAGTGGLGPA
CCDS41 LEGLTELCKQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEPY
170 180 190 200 210
>>CCDS44274.1 NME7 gene_id:29922|Hs108|chr1 (340 aa)
initn: 315 init1: 253 opt: 317 Z-score: 416.3 bits: 84.6 E(32554): 7.3e-17
Smith-Waterman score: 317; 38.1% identity (68.7% similar) in 134 aa overlap (22-154:58-187)
10 20 30 40 50
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHP-LILEAVHQQILSNKFL
:::::::::... :.: ... :
CCDS44 NKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKA----GFT
30 40 50 60 70 80
60 70 80 90 100 110
pF1KE3 IVRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPT
:.... .. ... :. .:..: :...:..:...::: :. . . ::: :. :.::.
CCDS44 ITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPA
90 100 110 120 130 140
120 130 140 150 160 170
pF1KE3 RVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLR
:: : .:::. :: ::..:: :: .::.::. :::
CCDS44 NSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNC
150 160 170 180 190 200
180 190
pF1KE3 CGPVCYSPEGGVHYVAGTGGLGPA
CCDS44 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV
210 220 230 240 250 260
>>CCDS1277.1 NME7 gene_id:29922|Hs108|chr1 (376 aa)
initn: 298 init1: 253 opt: 317 Z-score: 415.6 bits: 84.6 E(32554): 7.9e-17
Smith-Waterman score: 317; 38.1% identity (68.7% similar) in 134 aa overlap (22-154:94-223)
10 20 30 40 50
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHP-LILEAVHQQILSNKFL
:::::::::... :.: ... :
CCDS12 NKVNVFSRQLVLIDYGDQYTARQLGSRKEKTLALIKPDAISKAGEIIEIINKA----GFT
70 80 90 100 110
60 70 80 90 100 110
pF1KE3 IVRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPT
:.... .. ... :. .:..: :...:..:...::: :. . . ::: :. :.::.
CCDS12 ITKLKMMMLSRKEALDFHVDHQSRPFFNELIQFITTGPIIAMEILRDDAICEWKRLLGPA
120 130 140 150 160 170
120 130 140 150 160 170
pF1KE3 RVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLR
:: : .:::. :: ::..:: :: .::.::. :::
CCDS12 NSGVARTDASESIRALFGTDGIRNAAHGPDSFASAAREMELFFPSSGGCGPANTAKFTNC
180 190 200 210 220 230
180 190
pF1KE3 CGPVCYSPEGGVHYVAGTGGLGPA
CCDS12 TCCIVKPHAVSEGLLGKILMAIRDAGFEISAMQMFNMDRVNVEEFYEVYKGVVTEYHDMV
240 250 260 270 280 290
>>CCDS3099.1 NME9 gene_id:347736|Hs108|chr3 (263 aa)
initn: 256 init1: 141 opt: 278 Z-score: 366.9 bits: 75.1 E(32554): 4.1e-14
Smith-Waterman score: 278; 35.9% identity (62.7% similar) in 153 aa overlap (22-168:100-248)
10 20 30 40 50
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLI
:::.:::::::: : . ..: : :
CCDS30 DEALSDEDECVSHGKNNGEDEDMVSSERTCTLAIIKPDAVAHGKTDEII-MKIQEAGFEI
70 80 90 100 110 120
60 70 80 90 100
pF1KE3 VRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAH----KDAIQLWRTLM
. .: . . . ::... :. ...::. : ::: . ::.. .:.. :::.:
CCDS30 LTNEERTMTEAEVRLFYQHKAGEEAFEKLVHHMCSGPSHLLILTRTEGFEDVVTTWRTVM
130 140 150 160 170 180
110 120 130 140 150 160
pF1KE3 GPTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPD--FSEQRWYEEE
:: ::. :.:.:...: :..::: . .:.::.: .::. ::.. . :
CCDS30 GPRDPNVARREQPESLRAQYGTEMPFNAVHGSRDREDADRELALLFPSLKFSDK---DTE
190 200 210 220 230 240
170 180 190
pF1KE3 EPQLRCGPVCYSPEGGVHYVAGTGGLGPA
::
CCDS30 APQGESSTQPRLKITDLD
250 260
>>CCDS5452.1 NME8 gene_id:51314|Hs108|chr7 (588 aa)
initn: 419 init1: 211 opt: 274 Z-score: 356.4 bits: 74.3 E(32554): 1.6e-13
Smith-Waterman score: 274; 32.1% identity (67.9% similar) in 140 aa overlap (19-158:450-587)
10 20 30 40
pF1KE3 MTQNLGSEMASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNK
:: ::.:::: :... : . . .
CCDS54 QFAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLGLIKPHATSEQR--EQILKIVKEAG
420 430 440 450 460 470
50 60 70 80 90 100
pF1KE3 FLIVRMRELLWRKEDCQRFYREHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMG
: ........ :. ...: . :. ::. :.:... :: ..::.. .:. :: :::
CCDS54 FDLTQVKKMFLTPEQIEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMG
480 490 500 510 520 530
110 120 130 140 150 160
pF1KE3 PTRVFRARHVAPDSIRGSFGLTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQ
:: .:. ..:::::..::.. .: .::.... :.. . .: : :
CCDS54 PTDPEEAKLLSPDSIRAQFGISKLKNIVHGASNAYEAKEVVNRLFEDPEEN
540 550 560 570 580
170 180 190
pF1KE3 LRCGPVCYSPEGGVHYVAGTGGLGPA
194 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 23:27:53 2016 done: Sun Nov 6 23:27:53 2016
Total Scan time: 1.840 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]