FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3612, 115 aa
  1>>>pF1KE3612 115 - 115 aa - 115 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2785+/-0.000239; mu= 11.8021+/- 0.015
 mean_var=68.5175+/-13.695, 0's: 0 Z-trim(123.0): 2  B-trim: 908 in 1/59
 Lambda= 0.154944
 statistics sampled from 42008 (42017) to 42008 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.839), E-opt: 0.2 (0.493), width:  16
 Scan time:  4.990

The best scores are:                                      opt bits E(85289)
NP_001167609 (OMIM: 118440) cholecystokinin prepro ( 115)  775 180.5   5e-46
NP_000720 (OMIM: 118440) cholecystokinin prepropro ( 115)  775 180.5   5e-46


>>NP_001167609 (OMIM: 118440) cholecystokinin preproprot  (115 aa)
 initn: 775 init1: 775 opt: 775  Z-score: 947.3  bits: 180.5 E(85289): 5e-46
Smith-Waterman score: 775; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE3 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE3 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS
               70        80        90       100       110     

>>NP_000720 (OMIM: 118440) cholecystokinin preproprotein  (115 aa)
 initn: 775 init1: 775 opt: 775  Z-score: 947.3  bits: 180.5 E(85289): 5e-46
Smith-Waterman score: 775; 100.0% identity (100.0% similar) in 115 aa overlap (1-115:1-115)

               10        20        30        40        50        60
pF1KE3 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNSGVCLCVLMAVLAAGALTQPVPPADPAGSGLQRAEEAPRRQLRVSQRTDGESRAHLGA
               10        20        30        40        50        60

               70        80        90       100       110     
pF1KE3 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LLARYIQQARKAPSGRMSIVKNLQNLDPSHRISDRDYMGWMDFGRRSAEEYEYPS
               70        80        90       100       110     




115 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:50:14 2016 done: Sat Nov  5 22:50:15 2016
 Total Scan time:  4.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]