Result of FASTA (omim) for
pFN21AE3607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3607, 251 aa
1>>>pF1KE3607 251 - 251 aa - 251 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.5536+/-0.000466; mu= 18.7578+/- 0.029
mean_var=82.6809+/-16.432, 0's: 0 Z-trim(110.9): 390 B-trim: 70 in 1/48
Lambda= 0.141050
statistics sampled from 18919 (19379) to 18919 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.227), width: 16
Scan time: 5.900
The best scores are: opt bits E(85289)
NP_001138414 (OMIM: 610917) ras-related protein Ra ( 251) 1662 348.2 8.3e-96
NP_001136096 (OMIM: 610917) ras-related protein Ra ( 308) 1662 348.3 9.4e-96
NP_001243206 (OMIM: 610917) ras-related protein Ra ( 259) 1636 342.9 3.3e-94
NP_114140 (OMIM: 610917) ras-related protein Rab-3 ( 259) 1636 342.9 3.3e-94
NP_001138415 (OMIM: 610917) ras-related protein Ra ( 316) 1636 343.0 3.8e-94
NP_001243207 (OMIM: 610917) ras-related protein Ra ( 259) 1304 275.3 7.2e-74
NP_001136097 (OMIM: 610917) ras-related protein Ra ( 268) 1184 250.9 1.6e-66
NP_001243205 (OMIM: 610917) ras-related protein Ra ( 237) 1152 244.4 1.4e-64
NP_004905 (OMIM: 605662) ras-related protein Rab-3 ( 333) 905 194.3 2.3e-49
XP_011528847 (OMIM: 605662) PREDICTED: ras-related ( 341) 905 194.3 2.4e-49
XP_005261916 (OMIM: 605662) PREDICTED: ras-related ( 357) 905 194.3 2.4e-49
XP_016884594 (OMIM: 605662) PREDICTED: ras-related ( 306) 853 183.7 3.4e-46
XP_011528846 (OMIM: 605662) PREDICTED: ras-related ( 349) 846 182.3 9.9e-46
XP_011528848 (OMIM: 605662) PREDICTED: ras-related ( 336) 776 168.0 1.9e-41
XP_006724445 (OMIM: 605662) PREDICTED: ras-related ( 346) 776 168.1 1.9e-41
XP_006724444 (OMIM: 605662) PREDICTED: ras-related ( 370) 776 168.1 2e-41
XP_011528849 (OMIM: 605662) PREDICTED: ras-related ( 319) 724 157.4 2.8e-38
XP_016884593 (OMIM: 605662) PREDICTED: ras-related ( 343) 724 157.5 2.9e-38
XP_011528852 (OMIM: 605662) PREDICTED: ras-related ( 235) 580 128.0 1.5e-29
NP_002861 (OMIM: 602672) ras-related protein Rab-1 ( 203) 405 92.3 7.2e-19
NP_006852 (OMIM: 604199) ras-related protein Rab-3 ( 201) 393 89.8 3.9e-18
NP_057406 (OMIM: 612673) ras-related protein Rab-1 ( 215) 374 86.0 5.9e-17
NP_112243 (OMIM: 612565) ras-related protein Rab-1 ( 201) 369 85.0 1.2e-16
NP_002860 (OMIM: 179513) ras-related protein Rab-6 ( 208) 366 84.4 1.8e-16
NP_057661 (OMIM: 615852) ras-related protein Rab-6 ( 208) 361 83.3 3.6e-16
NP_004152 (OMIM: 179508) ras-related protein Rab-1 ( 205) 360 83.1 4.1e-16
NP_942599 (OMIM: 179513) ras-related protein Rab-6 ( 208) 360 83.1 4.2e-16
NP_057614 (OMIM: 613532) ras-related protein Rab-8 ( 207) 354 81.9 9.7e-16
XP_016873867 (OMIM: 612565) PREDICTED: ras-related ( 237) 351 81.4 1.6e-15
NP_057215 (OMIM: 612672) ras-related protein Rab-1 ( 200) 341 79.3 6e-15
XP_011519340 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 343 80.1 8e-15
XP_011519339 (OMIM: 614178) PREDICTED: EF-hand cal ( 493) 343 80.1 8e-15
NP_001157461 (OMIM: 609956) ras-related protein Ra ( 228) 338 78.7 9.9e-15
XP_011511195 (OMIM: 615852) PREDICTED: ras-related ( 195) 337 78.4 1e-14
NP_001138430 (OMIM: 614178) EF-hand calcium-bindin ( 731) 343 80.3 1e-14
XP_011519338 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 343 80.3 1e-14
XP_011519336 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 343 80.3 1e-14
XP_006719084 (OMIM: 614178) PREDICTED: EF-hand cal ( 732) 343 80.3 1e-14
NP_005361 (OMIM: 165040) ras-related protein Rab-8 ( 207) 337 78.5 1.1e-14
NP_001317400 (OMIM: 609956) ras-related protein Ra ( 196) 333 77.6 1.8e-14
NP_057238 (OMIM: 612945) ras-related protein Rab-4 ( 213) 333 77.7 1.9e-14
NP_001006639 (OMIM: 609956) ras-related protein Ra ( 223) 333 77.7 2e-14
NP_899050 (OMIM: 201000,606144) ras-related protei ( 237) 332 77.5 2.4e-14
NP_001265595 (OMIM: 201000,606144) ras-related pro ( 237) 332 77.5 2.4e-14
NP_001265596 (OMIM: 201000,606144) ras-related pro ( 237) 332 77.5 2.4e-14
NP_057361 (OMIM: 201000,606144) ras-related protei ( 237) 332 77.5 2.4e-14
NP_001265597 (OMIM: 201000,606144) ras-related pro ( 237) 332 77.5 2.4e-14
XP_011526322 (OMIM: 165040) PREDICTED: ras-related ( 215) 329 76.8 3.4e-14
NP_055168 (OMIM: 605455) ras-related protein Rab-2 ( 256) 327 76.5 5e-14
NP_001161078 (OMIM: 604199) ras-related protein Ra ( 152) 323 75.4 6.3e-14
>>NP_001138414 (OMIM: 610917) ras-related protein Rab-34 (251 aa)
initn: 1662 init1: 1662 opt: 1662 Z-score: 1841.1 bits: 348.2 E(85289): 8.3e-96
Smith-Waterman score: 1662; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL
190 200 210 220 230 240
250
pF1KE3 TASKKKPTCCP
:::::::::::
NP_001 TASKKKPTCCP
250
>>NP_001136096 (OMIM: 610917) ras-related protein Rab-34 (308 aa)
initn: 1662 init1: 1662 opt: 1662 Z-score: 1840.0 bits: 348.3 E(85289): 9.4e-96
Smith-Waterman score: 1662; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:58-308)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHK
::::::::::::::::::::::::::::::
NP_001 AGSWHRQMLRSSLRFPITNSAGAPCKAAGRMNILAPVRRDRVLAELPQCLRKEAALHGHK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 DFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFE
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE3 MERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADA
150 160 170 180 190 200
160 170 180 190 200 210
pF1KE3 LKENDPSSVLLFLTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKENDPSSVLLFLTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFE
210 220 230 240 250 260
220 230 240 250
pF1KE3 ANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
:::::::::::::::::::::::::::::::::::::::::
NP_001 ANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
270 280 290 300
>>NP_001243206 (OMIM: 610917) ras-related protein Rab-34 (259 aa)
initn: 1650 init1: 1099 opt: 1636 Z-score: 1812.3 bits: 342.9 E(85289): 3.3e-94
Smith-Waterman score: 1636; 96.9% identity (96.9% similar) in 259 aa overlap (1-251:1-259)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME
::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
190 200 210 220 230 240
240 250
pF1KE3 SDDSNLYLTASKKKPTCCP
:::::::::::::::::::
NP_001 SDDSNLYLTASKKKPTCCP
250
>>NP_114140 (OMIM: 610917) ras-related protein Rab-34 is (259 aa)
initn: 1650 init1: 1099 opt: 1636 Z-score: 1812.3 bits: 342.9 E(85289): 3.3e-94
Smith-Waterman score: 1636; 96.9% identity (96.9% similar) in 259 aa overlap (1-251:1-259)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME
::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_114 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
190 200 210 220 230 240
240 250
pF1KE3 SDDSNLYLTASKKKPTCCP
:::::::::::::::::::
NP_114 SDDSNLYLTASKKKPTCCP
250
>>NP_001138415 (OMIM: 610917) ras-related protein Rab-34 (316 aa)
initn: 1650 init1: 1099 opt: 1636 Z-score: 1811.3 bits: 343.0 E(85289): 3.8e-94
Smith-Waterman score: 1636; 96.9% identity (96.9% similar) in 259 aa overlap (1-251:58-316)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHK
::::::::::::::::::::::::::::::
NP_001 AGSWHRQMLRSSLRFPITNSAGAPCKAAGRMNILAPVRRDRVLAELPQCLRKEAALHGHK
30 40 50 60 70 80
40 50 60 70 80 90
pF1KE3 DFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFE
90 100 110 120 130 140
100 110 120 130 140 150
pF1KE3 MERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADA
150 160 170 180 190 200
160 170 180 190 200
pF1KE3 LKENDPSSVLLFL--------TPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFF
::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_001 LKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFF
210 220 230 240 250 260
210 220 230 240 250
pF1KE3 RVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
270 280 290 300 310
>>NP_001243207 (OMIM: 610917) ras-related protein Rab-34 (259 aa)
initn: 1311 init1: 760 opt: 1304 Z-score: 1447.2 bits: 275.3 E(85289): 7.2e-74
Smith-Waterman score: 1304; 94.9% identity (96.3% similar) in 215 aa overlap (45-251:45-259)
20 30 40 50 60 70
pF1KE3 ELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCK
:...::::::::::::::::::::::::::
NP_001 PLLGPLLSPFPLPAGSWHRQMLRSSLRFPITNSAGFKISKVIVVGDLSVGKTCLINRFCK
20 30 40 50 60 70
80 90 100 110 120 130
pF1KE3 DTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNL
80 90 100 110 120 130
140 150 160 170 180
pF1KE3 NDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALMEKDALQVAQEMKAEY
::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 NDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKAEY
140 150 160 170 180 190
190 200 210 220 230 240
pF1KE3 WAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKK
200 210 220 230 240 250
250
pF1KE3 PTCCP
:::::
NP_001 PTCCP
>>NP_001136097 (OMIM: 610917) ras-related protein Rab-34 (268 aa)
initn: 1196 init1: 752 opt: 1184 Z-score: 1315.0 bits: 250.9 E(85289): 1.6e-66
Smith-Waterman score: 1184; 95.3% identity (95.3% similar) in 192 aa overlap (1-183:58-249)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHK
::::::::::::::::::::::::::::::
NP_001 AGSWHRQMLRSSLRFPITNSAGAPCKAAGRMNILAPVRRDRVLAELPQCLRKEAALHGHK
30 40 50 60 70 80
40 50 60 70 80
pF1KE3 DFHPRVTCACQEHRTGTVG-FKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
NP_001 DFHPRVTCACQEHRTGTVGRFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF
90 100 110 120 130 140
90 100 110 120 130 140
pF1KE3 EMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLAD
150 160 170 180 190 200
150 160 170 180 190 200
pF1KE3 ALKENDPSSVLLFL--------TPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFF
:::::::::::::: ::::::::::::::::::::
NP_001 ALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKTVQRLPSPRALCHPHSSR
210 220 230 240 250 260
210 220 230 240 250
pF1KE3 FRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
NP_001 A
>>NP_001243205 (OMIM: 610917) ras-related protein Rab-34 (237 aa)
initn: 1507 init1: 615 opt: 1152 Z-score: 1280.5 bits: 244.4 E(85289): 1.4e-64
Smith-Waterman score: 1445; 88.4% identity (88.4% similar) in 259 aa overlap (1-251:1-237)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGF----------
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ------------CKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
60 70 80 90
130 140 150 160 170
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME
::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
160 170 180 190 200 210
240 250
pF1KE3 SDDSNLYLTASKKKPTCCP
:::::::::::::::::::
NP_001 SDDSNLYLTASKKKPTCCP
220 230
>>NP_004905 (OMIM: 605662) ras-related protein Rab-36 [H (333 aa)
initn: 953 init1: 726 opt: 905 Z-score: 1007.1 bits: 194.3 E(85289): 2.3e-49
Smith-Waterman score: 927; 54.6% identity (80.0% similar) in 260 aa overlap (6-250:77-333)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPR
:: ::::.: .:. :: :. .. :: .
NP_004 SGGPGRAEPQLSQPSLDCGRMRSSLTPLGPPVSRDRVIASFPKWYTPEACLQLREHFHGQ
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 VTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFE
:. :::.. :::::.:.:::.::::: :::: ::.::::..::..::::::::::.::::
NP_004 VSAACQRRNTGTVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFE
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 VLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKEND
. :::.:::.:::::::.::::::.::::::.:: .:.:.:: .::::.::: :::.::.
NP_004 IAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENE
170 180 190 200 210 220
160 170 180 190 200
pF1KE3 PSSVLLFLTPAQYALM--------EKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAAL
.: ..::. .. :. : ::...:.::.::::.::. :::::. :: :::::
NP_004 AGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAAL
230 240 250 260 270 280
210 220 230 240 250
pF1KE3 TFEANVLAELEKSGARRI----GDVVRINSDDSNLYLTASKKKPT---CCP
.:: .:: .::.... :. ::....... . : .:.:. ::
NP_004 AFEQSVLQDLERQSSARLQVGNGDLIQMEGSPPE---TQESKRPSSLGCC
290 300 310 320 330
>>XP_011528847 (OMIM: 605662) PREDICTED: ras-related pro (341 aa)
initn: 931 init1: 726 opt: 905 Z-score: 1007.0 bits: 194.3 E(85289): 2.4e-49
Smith-Waterman score: 915; 58.2% identity (82.3% similar) in 237 aa overlap (6-230:101-337)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPR
:: ::::.: .:. :: :. .. :: .
XP_011 TLLPLPELCHASQPSKDCGRMRSSLTPLGPPVSRDRVIASFPKWYTPEACLQLREHFHGQ
80 90 100 110 120 130
40 50 60 70 80 90
pF1KE3 VTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFE
:. :::.. :::::.:.:::.::::: :::: ::.::::..::..::::::::::.::::
XP_011 VSAACQRRNTGTVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFE
140 150 160 170 180 190
100 110 120 130 140 150
pF1KE3 VLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKEND
. :::.:::.:::::::.::::::.::::::.:: .:.:.:: .::::.::: :::.::.
XP_011 IAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENE
200 210 220 230 240 250
160 170 180 190 200
pF1KE3 PSSVLLFLTPAQYALM--------EKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAAL
.: ..::. .. :. : ::...:.::.::::.::. :::::. :: :::::
XP_011 AGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAAL
260 270 280 290 300 310
210 220 230 240 250
pF1KE3 TFEANVLAELEKSGARRI----GDVVRINSDDSNLYLTASKKKPTCCP
.:: .:: .::.... :. ::..:
XP_011 AFEQSVLQDLERQSSARLQVGNGDLIRGWHP
320 330 340
251 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:08:46 2016 done: Mon Nov 7 01:08:47 2016
Total Scan time: 5.900 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]