Result of FASTA (ccds) for
pFN21AE3607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3607, 251 aa
1>>>pF1KE3607 251 - 251 aa - 251 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.6072+/-0.00107; mu= 18.4283+/- 0.065
mean_var=78.9822+/-16.410, 0's: 0 Z-trim(104.4): 186 B-trim: 300 in 1/49
Lambda= 0.144314
statistics sampled from 7691 (7904) to 7691 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.243), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS45636.1 RAB34 gene_id:83871|Hs108|chr17 ( 251) 1662 355.7 1.7e-98
CCDS11240.1 RAB34 gene_id:83871|Hs108|chr17 ( 259) 1636 350.3 7.4e-97
CCDS54101.1 RAB34 gene_id:83871|Hs108|chr17 ( 268) 1184 256.2 1.6e-68
CCDS58536.1 RAB34 gene_id:83871|Hs108|chr17 ( 237) 1152 249.5 1.5e-66
CCDS13805.1 RAB36 gene_id:9609|Hs108|chr22 ( 333) 905 198.2 5.7e-51
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 405 93.9 9e-20
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 393 91.4 5e-19
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 374 87.5 8.1e-18
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 374 87.5 8.2e-18
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 369 86.4 1.6e-17
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 366 85.8 2.5e-17
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 361 84.8 5.2e-17
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 360 84.5 6e-17
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 360 84.5 6e-17
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 354 83.3 1.4e-16
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 341 80.6 9.1e-16
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 339 80.2 1.3e-15
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 338 80.0 1.5e-15
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12 ( 731) 343 81.6 1.6e-15
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 337 79.8 1.7e-15
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 333 78.9 2.9e-15
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 333 78.9 3e-15
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 333 79.0 3.1e-15
CCDS4962.1 RAB23 gene_id:51715|Hs108|chr6 ( 237) 332 78.8 3.7e-15
CCDS9768.1 RAB15 gene_id:376267|Hs108|chr14 ( 208) 330 78.3 4.6e-15
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 327 77.8 8.1e-15
CCDS53836.1 RAB35 gene_id:11021|Hs108|chr12 ( 152) 323 76.7 1e-14
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 322 76.6 1.4e-14
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 ( 254) 323 76.9 1.4e-14
CCDS3747.1 RAB33B gene_id:83452|Hs108|chr4 ( 229) 322 76.7 1.5e-14
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX ( 237) 322 76.7 1.6e-14
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 ( 254) 322 76.7 1.7e-14
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 318 75.8 2.7e-14
CCDS6662.1 RASEF gene_id:158158|Hs108|chr9 ( 740) 323 77.5 2.9e-14
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 316 75.3 3.3e-14
CCDS56275.1 RAB43 gene_id:339122|Hs108|chr3 ( 155) 314 74.8 3.8e-14
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 314 75.0 4.8e-14
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 312 74.6 6.3e-14
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 312 74.6 6.3e-14
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 312 74.6 6.8e-14
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 310 74.1 8.3e-14
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 310 74.2 8.4e-14
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 ( 194) 308 73.7 1e-13
CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 ( 203) 306 73.3 1.4e-13
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11 ( 217) 306 73.3 1.5e-13
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 303 72.7 2.2e-13
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 301 72.3 3.1e-13
CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11 ( 175) 298 71.6 4.1e-13
CCDS58373.1 RAB11A gene_id:8766|Hs108|chr15 ( 155) 297 71.3 4.4e-13
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 297 71.4 5.5e-13
>>CCDS45636.1 RAB34 gene_id:83871|Hs108|chr17 (251 aa)
initn: 1662 init1: 1662 opt: 1662 Z-score: 1881.8 bits: 355.7 E(32554): 1.7e-98
Smith-Waterman score: 1662; 100.0% identity (100.0% similar) in 251 aa overlap (1-251:1-251)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL
190 200 210 220 230 240
250
pF1KE3 TASKKKPTCCP
:::::::::::
CCDS45 TASKKKPTCCP
250
>>CCDS11240.1 RAB34 gene_id:83871|Hs108|chr17 (259 aa)
initn: 1650 init1: 1099 opt: 1636 Z-score: 1852.3 bits: 350.3 E(32554): 7.4e-97
Smith-Waterman score: 1636; 96.9% identity (96.9% similar) in 259 aa overlap (1-251:1-259)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME
::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS11 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE3 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
190 200 210 220 230 240
240 250
pF1KE3 SDDSNLYLTASKKKPTCCP
:::::::::::::::::::
CCDS11 SDDSNLYLTASKKKPTCCP
250
>>CCDS54101.1 RAB34 gene_id:83871|Hs108|chr17 (268 aa)
initn: 1196 init1: 752 opt: 1184 Z-score: 1343.6 bits: 256.2 E(32554): 1.6e-68
Smith-Waterman score: 1184; 95.3% identity (95.3% similar) in 192 aa overlap (1-183:58-249)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHK
::::::::::::::::::::::::::::::
CCDS54 AGSWHRQMLRSSLRFPITNSAGAPCKAAGRMNILAPVRRDRVLAELPQCLRKEAALHGHK
30 40 50 60 70 80
40 50 60 70 80
pF1KE3 DFHPRVTCACQEHRTGTVG-FKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF
::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::
CCDS54 DFHPRVTCACQEHRTGTVGRFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF
90 100 110 120 130 140
90 100 110 120 130 140
pF1KE3 EMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLAD
150 160 170 180 190 200
150 160 170 180 190 200
pF1KE3 ALKENDPSSVLLFL--------TPAQYALMEKDALQVAQEMKAEYWAVSSLTGENVREFF
:::::::::::::: ::::::::::::::::::::
CCDS54 ALKENDPSSVLLFLVGSKKDLSTPAQYALMEKDALQVAQEMKTVQRLPSPRALCHPHSSR
210 220 230 240 250 260
210 220 230 240 250
pF1KE3 FRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
CCDS54 A
>>CCDS58536.1 RAB34 gene_id:83871|Hs108|chr17 (237 aa)
initn: 1507 init1: 615 opt: 1152 Z-score: 1308.2 bits: 249.5 E(32554): 1.5e-66
Smith-Waterman score: 1445; 88.4% identity (88.4% similar) in 259 aa overlap (1-251:1-237)
10 20 30 40 50 60
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGF----------
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ------------CKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
60 70 80 90
130 140 150 160 170
pF1KE3 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME
::::::::::::::::::::::::::::::::::::::::::: :::::::::
CCDS58 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
160 170 180 190 200 210
240 250
pF1KE3 SDDSNLYLTASKKKPTCCP
:::::::::::::::::::
CCDS58 SDDSNLYLTASKKKPTCCP
220 230
>>CCDS13805.1 RAB36 gene_id:9609|Hs108|chr22 (333 aa)
initn: 953 init1: 726 opt: 905 Z-score: 1028.5 bits: 198.2 E(32554): 5.7e-51
Smith-Waterman score: 927; 54.6% identity (80.0% similar) in 260 aa overlap (6-250:77-333)
10 20 30
pF1KE3 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPR
:: ::::.: .:. :: :. .. :: .
CCDS13 SGGPGRAEPQLSQPSLDCGRMRSSLTPLGPPVSRDRVIASFPKWYTPEACLQLREHFHGQ
50 60 70 80 90 100
40 50 60 70 80 90
pF1KE3 VTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFE
:. :::.. :::::.:.:::.::::: :::: ::.::::..::..::::::::::.::::
CCDS13 VSAACQRRNTGTVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFE
110 120 130 140 150 160
100 110 120 130 140 150
pF1KE3 VLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKEND
. :::.:::.:::::::.::::::.::::::.:: .:.:.:: .::::.::: :::.::.
CCDS13 IAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENE
170 180 190 200 210 220
160 170 180 190 200
pF1KE3 PSSVLLFLTPAQYALM--------EKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAAL
.: ..::. .. :. : ::...:.::.::::.::. :::::. :: :::::
CCDS13 AGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVAAL
230 240 250 260 270 280
210 220 230 240 250
pF1KE3 TFEANVLAELEKSGARRI----GDVVRINSDDSNLYLTASKKKPT---CCP
.:: .:: .::.... :. ::....... . : .:.:. ::
CCDS13 AFEQSVLQDLERQSSARLQVGNGDLIQMEGSPPE---TQESKRPSSLGCC
290 300 310 320 330
>>CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 (203 aa)
initn: 359 init1: 333 opt: 405 Z-score: 468.5 bits: 93.9 E(32554): 9e-20
Smith-Waterman score: 405; 36.5% identity (69.0% similar) in 203 aa overlap (54-250:10-200)
30 40 50 60 70 80
pF1KE3 AALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKA
:....:: .::::::: :: .:.:...: .
CCDS10 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYIS
10 20 30
90 100 110 120 130 140
pF1KE3 TIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHT
:::.::... .. : ..::.:::::::::: :...:::::..::.:....: :.:.
CCDS10 TIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENI
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 KQWLADALKENDPSSVLLFLT------PAQYALMEKDALQVAQEMKAEYWAVSSLTGENV
..:. ..::: ..: .: :. .....: ..:.: ... .:. .. ::
CCDS10 QNWMK-SIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 REFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
: : .: ..: :::.:: :. . : : . : .::. . :
CCDS10 DEAFSSLAR-----DILL---KSGGRRSGNGNKPPSTDLK---TCDKKNTNKCSLG
160 170 180 190 200
>>CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 (201 aa)
initn: 369 init1: 320 opt: 393 Z-score: 455.0 bits: 91.4 E(32554): 5e-19
Smith-Waterman score: 393; 33.8% identity (68.2% similar) in 201 aa overlap (54-250:10-201)
30 40 50 60 70 80
pF1KE3 AALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKA
:....:: .:::. :. :: .::. .: .
CCDS41 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYIT
10 20 30
90 100 110 120 130 140
pF1KE3 TIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHT
::::::... :. : .::.:::::::::. :.::::::....:.:...... :. ..
CCDS41 TIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNV
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 KQWLADALKENDPSSVLLFLT----PAQYALMEKDALQVAQEMKAEYWAVSSLTGENVRE
:.:: . .. : .: . : . .. .:: . : .: . . .:. . ::.:
CCDS41 KRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 FFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
.: .. :...:. .: :. .. .:::..... ::.: ::
CCDS41 MFNCITELVLRAKK-DNLAKQQQQQQNDVVKLTKN--------SKRKKRCC
160 170 180 190 200
>>CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 (212 aa)
initn: 321 init1: 321 opt: 374 Z-score: 433.4 bits: 87.5 E(32554): 8.1e-18
Smith-Waterman score: 374; 36.3% identity (69.0% similar) in 171 aa overlap (54-218:10-178)
30 40 50 60 70 80
pF1KE3 AALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKA
.....:: .::::::. :: . : ... .
CCDS76 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHIS
10 20 30
90 100 110 120 130 140
pF1KE3 TIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHT
::::::.:. .:: :: .:.::::::::.. :.. ::: ::.:..:..... : .:
CCDS76 TIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHI
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 KQWLADALKENDPSSVLLFLTPAQYALMEKDAL------QVAQEMKAEYWAVSSLTGENV
.:..: . : : .: .: . .: . :.:.:. ... .:. :. :.
CCDS76 MKWVSD-VDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNI
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 REFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
.: : :.. :...:. :::
CCDS76 KESFTRLTELVLQAHR-KELEGLRMRASNELALAELEEEEGKPEGPANSSKTCWC
160 170 180 190 200 210
>>CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 (215 aa)
initn: 355 init1: 325 opt: 374 Z-score: 433.3 bits: 87.5 E(32554): 8.2e-18
Smith-Waterman score: 374; 35.4% identity (69.5% similar) in 164 aa overlap (52-210:11-174)
30 40 50 60 70 80
pF1KE3 KEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNY
: : :..::..:::.::...: . : .
CCDS68 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADC
10 20 30 40
90 100 110 120 130 140
pF1KE3 KATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLE
::::.: . .:: : ..::.:::::::::. .. .::::: . ..:.... .. .
CCDS68 PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYN
50 60 70 80 90 100
150 160 170 180 190
pF1KE3 HTKQWLADALKENDPSSVLLFL-----TPAQYALMEKDALQVAQEMKAEYWAVSSLTGEN
: ..::.:: . ..:..:.... :: . ..: : :.: . .:. ::::
CCDS68 HLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGEN
110 120 130 140 150 160
200 210 220 230 240 250
pF1KE3 VREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCCP
:.. :...: ..
CCDS68 VEDAFLEAAKKIYQNIQDGSLDLNAAESGVQHKPSAPQGGRLTSEPQPQREGCGC
170 180 190 200 210
>>CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 (201 aa)
initn: 337 init1: 337 opt: 369 Z-score: 428.0 bits: 86.4 E(32554): 1.6e-17
Smith-Waterman score: 369; 34.0% identity (63.6% similar) in 206 aa overlap (54-250:10-201)
30 40 50 60 70 80
pF1KE3 AALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKA
:....:: .:::.::. :: ::. ..: .
CCDS31 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYIS
10 20 30
90 100 110 120 130 140
pF1KE3 TIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHT
::::::... .:. : ..::.:::::::::. :.:.:::::..::.:....: : ..
CCDS31 TIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANV
40 50 60 70 80 90
150 160 170 180 190
pF1KE3 KQWLADALKENDPSSVLLFLTPAQYALMEKD------ALQVAQEMKAEYWAVSSLTGENV
:::: . . . .: .:. . : : : . :. . . .:. .. ::
CCDS31 KQWLQE-IDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNV
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 REFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYLTASKKKPT---CCP
.. :. .:: :..: :.: . ... :: . .. ::. ::
CCDS31 EQAFMTMAA---------EIKK----RMGPGAASGGERPNLKIDSTPVKPAGGGCC
160 170 180 190 200
251 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:08:45 2016 done: Mon Nov 7 01:08:46 2016
Total Scan time: 2.170 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]