FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3592, 248 aa
  1>>>pF1KE3592 248 - 248 aa - 248 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7251+/-0.00069; mu= 7.1260+/- 0.042
 mean_var=176.8918+/-34.942, 0's: 0 Z-trim(117.7): 15  B-trim: 2 in 1/53
 Lambda= 0.096432
 statistics sampled from 18529 (18542) to 18529 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.57), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS10814.1 CMTM2 gene_id:146225|Hs108|chr16       ( 248) 1718 249.6 1.4e-66
CCDS56001.1 CMTM2 gene_id:146225|Hs108|chr16       ( 195)  695 107.2 8.2e-24


>>CCDS10814.1 CMTM2 gene_id:146225|Hs108|chr16            (248 aa)
 initn: 1718 init1: 1718 opt: 1718  Z-score: 1308.7  bits: 249.6 E(32554): 1.4e-66
Smith-Waterman score: 1718; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KE3 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP
              190       200       210       220       230       240

               
pF1KE3 PGPAKGKK
       ::::::::
CCDS10 PGPAKGKK
               

>>CCDS56001.1 CMTM2 gene_id:146225|Hs108|chr16            (195 aa)
 initn: 1360 init1: 695 opt: 695  Z-score: 541.0  bits: 107.2 E(32554): 8.2e-24
Smith-Waterman score: 1258; 78.6% identity (78.6% similar) in 248 aa overlap (1-248:1-195)

               10        20        30        40        50        60
pF1KE3 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAPKAAKGAKPEPAPAPPPPGAKPEEDKKDGKEPSDKPQKAVQDHKEPSDKPQKAVQPKH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSLGCLIAAMILLSSLTVHPILRLIITM
       :::::::::::::::::::::::::::::::::::                         
CCDS56 EVGTRRGCRRYRWELKDSNKEFWLLGHAEIKIRSL-------------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KE3 EISFFSFFILLYSFAIHRYIPFILWPISDLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL
                                   ::::::::::::::::::::::::::::::::
CCDS56 ----------------------------DLFNDLIACAFLVGAVVFAVRSRRSMNLHYLL
                                     100       110       120       

              190       200       210       220       230       240
pF1KE3 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AVILIGAAGVFAFIDVCLQRNHFRGKKAKKHMLVPPPGKEKGPQQGKGPEPAKPPEPGKP
       130       140       150       160       170       180       

               
pF1KE3 PGPAKGKK
       ::::::::
CCDS56 PGPAKGKK
       190     




248 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 00:33:32 2016 done: Mon Nov  7 00:33:33 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]