Result of FASTA (ccds) for
pFN21AE3590
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3590, 203 aa
1>>>pF1KE3590 203 - 203 aa - 203 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2465+/-0.000987; mu= 13.8181+/- 0.060
mean_var=76.3817+/-15.367, 0's: 0 Z-trim(105.9): 195 B-trim: 275 in 1/48
Lambda= 0.146751
statistics sampled from 8474 (8694) to 8474 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.267), width: 16
Scan time: 2.030
The best scores are: opt bits E(32554)
CCDS34300.1 RAB24 gene_id:53917|Hs108|chr5 ( 203) 1352 295.5 1.5e-80
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 476 110.0 1.1e-24
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 476 110.1 1.2e-24
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 475 109.8 1.2e-24
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 453 105.2 3.1e-23
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 435 101.4 4.5e-22
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 ( 212) 420 98.2 3.9e-21
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 ( 194) 419 97.9 4.2e-21
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 401 94.1 6.3e-20
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 401 94.1 6.3e-20
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 397 93.3 1.1e-19
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18 ( 195) 382 90.1 9.7e-19
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 361 85.7 2.2e-17
CCDS77710.1 RAB5A gene_id:5868|Hs108|chr3 ( 201) 354 84.2 6e-17
CCDS33030.1 RAB4B gene_id:53916|Hs108|chr19 ( 213) 350 83.4 1.1e-16
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 348 82.9 1.5e-16
CCDS73011.1 RAB7B gene_id:338382|Hs108|chr1 ( 199) 346 82.5 1.9e-16
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 346 82.5 2e-16
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 ( 254) 346 82.6 2.3e-16
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 344 82.1 2.6e-16
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 ( 254) 345 82.4 2.7e-16
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 344 82.1 2.8e-16
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 344 82.1 2.8e-16
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 344 82.1 2.8e-16
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 341 81.4 4.1e-16
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 339 81.0 5.9e-16
CCDS13805.1 RAB36 gene_id:9609|Hs108|chr22 ( 333) 341 81.6 6e-16
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 336 80.4 8.5e-16
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 336 80.4 9e-16
CCDS31050.1 RAB4A gene_id:5867|Hs108|chr1 ( 218) 335 80.2 1e-15
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 333 79.7 1.3e-15
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 333 79.8 1.4e-15
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 333 79.8 1.5e-15
CCDS42410.1 RAB12 gene_id:201475|Hs108|chr18 ( 244) 332 79.6 1.8e-15
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 330 79.1 2.2e-15
CCDS4962.1 RAB23 gene_id:51715|Hs108|chr6 ( 237) 329 78.9 2.7e-15
CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11 ( 175) 327 78.4 2.9e-15
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 326 78.3 3.8e-15
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 327 78.5 3.8e-15
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 325 78.1 4.4e-15
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX ( 221) 324 77.9 5.3e-15
CCDS41413.1 RAB25 gene_id:57111|Hs108|chr1 ( 213) 323 77.6 6e-15
CCDS14156.1 RAB9A gene_id:9367|Hs108|chrX ( 201) 322 77.4 6.6e-15
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 321 77.2 8.2e-15
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 320 77.0 9.7e-15
CCDS1459.1 RAB29 gene_id:8934|Hs108|chr1 ( 203) 318 76.6 1.2e-14
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 316 76.2 1.7e-14
CCDS76258.1 RAB7B gene_id:338382|Hs108|chr1 ( 157) 314 75.6 1.8e-14
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 314 75.7 2e-14
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 314 75.7 2.2e-14
>>CCDS34300.1 RAB24 gene_id:53917|Hs108|chr5 (203 aa)
initn: 1352 init1: 1352 opt: 1352 Z-score: 1559.6 bits: 295.5 E(32554): 1.5e-80
Smith-Waterman score: 1352; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203)
10 20 30 40 50 60
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGDRTVTLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 IWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQIYLCGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQV
130 140 150 160 170 180
190 200
pF1KE3 MTEDKGVDLGQKPNPYFYSCCHH
:::::::::::::::::::::::
CCDS34 MTEDKGVDLGQKPNPYFYSCCHH
190 200
>>CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 (216 aa)
initn: 390 init1: 272 opt: 476 Z-score: 556.9 bits: 110.0 E(32554): 1.1e-24
Smith-Waterman score: 476; 43.0% identity (72.0% similar) in 207 aa overlap (2-201:15-214)
10 20 30 40
pF1KE3 MSGQRV-DVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAF
.:... . :.:.::. :::.::: :.:. .: :: .::::::
CCDS11 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAF
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 VAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKE
..... . : :: . ::::::.:::.... .:::::.:::: ::.:....: ::: ::::
CCDS11 LTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKE
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 L-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDEL
: :. . : : :.:.:: .: :.:...: :::. . ..:::.::...:.:.
CCDS11 LQRQASPNIVIALAGNKADLAS----KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEI
120 130 140 150 160 170
170 180 190 200
pF1KE3 FQKVAEDYVSVA---AFQVMTEDKGVDLGQKPNPYFYS-CCHH
:. .:. . : . ...:::: :. :: : ::
CCDS11 FMAIAKKLPKNEPQNATGAPGRNRGVDL-QENNPASRSQCCSN
180 190 200 210
>>CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 (249 aa)
initn: 390 init1: 272 opt: 476 Z-score: 556.0 bits: 110.1 E(32554): 1.2e-24
Smith-Waterman score: 476; 43.0% identity (72.0% similar) in 207 aa overlap (2-201:48-247)
10 20 30
pF1KE3 MSGQRV-DVKVVMLGKEYVGKTSLVERYVHD
.:... . :.:.::. :::.::: :.:.
CCDS58 TSPHPHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKG
20 30 40 50 60 70
40 50 60 70 80
pF1KE3 RFLVGPYQ-NTIGAAFVAKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYD
.: :: .::::::..... . : :: . ::::::.:::.... .:::::.:::: ::
CCDS58 QF--HEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYD
80 90 100 110 120 130
90 100 110 120 130 140
pF1KE3 LTDSSSFERAKFWVKEL-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKA
.:....: ::: ::::: :. . : : :.:.:: .: :.:...: :::. .
CCDS58 ITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS----KRAVEFQEAQAYADDNSL
140 150 160 170 180 190
150 160 170 180 190 200
pF1KE3 QLFETSSKTGQSVDELFQKVAEDYVSVA---AFQVMTEDKGVDLGQKPNPYFYS-CCHH
..:::.::...:.:.:. .:. . : . ...:::: :. :: : ::
CCDS58 LFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDL-QENNPASRSQCCSN
200 210 220 230 240
>>CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 (215 aa)
initn: 420 init1: 271 opt: 475 Z-score: 555.7 bits: 109.8 E(32554): 1.2e-24
Smith-Waterman score: 475; 41.7% identity (71.8% similar) in 206 aa overlap (2-201:14-213)
10 20 30 40
pF1KE3 MSGQRV-DVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAFV
.:... . :.:.::. :::.::: :.:. .: .: .::::::.
CCDS26 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQF--HEFQESTIGAAFL
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 AKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL
.... . : :: . ::::::.:::.... .:::::.:::: ::.:. :: ::: :::::
CCDS26 TQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 -RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELF
:. . : : :.:.:: . .: :::...:.:::. . ..:::.::...:.:.:
CCDS26 QRQASPNIVIALSGNKADLAN----KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF
120 130 140 150 160 170
170 180 190 200
pF1KE3 QKVAEDYVSVAAFQVMTED---KGVDLGQKPNPYFYSCCHH
. .:. . . ... .:::: . .: .::
CCDS26 MAIAKKLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN
180 190 200 210
>>CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 (215 aa)
initn: 384 init1: 269 opt: 453 Z-score: 530.6 bits: 105.2 E(32554): 3.1e-23
Smith-Waterman score: 453; 41.4% identity (70.7% similar) in 198 aa overlap (9-201:22-213)
10 20 30 40
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQ-NTIGAAFV
:.:.::. :::.::: :.:. .: :: .::::::.
CCDS89 MTSRSTARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQF--HEYQESTIGAAFL
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 AKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL
.. . . : :: . ::::::.:::.... .:::::.:::: ::.:.. .: ::: :::::
CCDS89 TQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 -RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELF
:. . : : :.:.:: . .: :.....: :::. . ..:::.::...:..::
CCDS89 QRQASPSIVIALAGNKADLAN----KRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF
120 130 140 150 160 170
170 180 190 200
pF1KE3 QKVAEDYVSVAAFQV---MTEDKGVDLGQKPNPYFYSCCHH
.:. . .. ...:::: .. . .::
CCDS89 LAIAKKLPKSEPQNLGGAAGRSRGVDLHEQSQQNKSQCCSN
180 190 200 210
>>CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 (225 aa)
initn: 394 init1: 253 opt: 435 Z-score: 509.7 bits: 101.4 E(32554): 4.5e-22
Smith-Waterman score: 435; 40.6% identity (75.4% similar) in 187 aa overlap (2-186:14-192)
10 20 30 40
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAK
.:. . :::.::. ::::::: :: ...: . .:. :.:..:
CCDS90 MAAAGGGGGGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKF-NDKHITTLQASFLTK
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 VMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRS
...: . :.:.::::::.::..:.. :::: ...::. ::.:: .::...: ::::::.
CCDS90 KLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRK
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 LEEGCQIYLC--GTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQ
. : .: :: :.: :: .: :.:.......::... :. ..::.: .....:::
CCDS90 ML-GNEICLCIVGNKIDLEKE----RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL
120 130 140 150 160 170
170 180 190 200
pF1KE3 KVAEDYVSVAAFQVMTEDKGVDLGQKPNPYFYSCCHH
. . .. .: :: . ::
CCDS90 DLCKRMIETA--QVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSSG
180 190 200 210 220
>>CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 (212 aa)
initn: 355 init1: 214 opt: 420 Z-score: 492.9 bits: 98.2 E(32554): 3.9e-21
Smith-Waterman score: 420; 39.1% identity (70.0% similar) in 207 aa overlap (2-203:15-212)
10 20 30 40
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFL-VGPYQNTIGAAFV
: :: :.:.::. :::.::. :::.. : . : :.: ::
CCDS25 MAQAHRTPQPRAAPSQPRV-FKLVLLGSGSVGKSSLALRYVKNDFKSILP---TVGCAFF
10 20 30 40 50
50 60 70 80 90 100
pF1KE3 AKVMSVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL
.::..:: .. : ::::::.:.:... ..:.:::.::.. ::.: ..:: .:. :.:.:
CCDS25 TKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE3 RS-LEEG-CQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDEL
. :. : ..: :.:.:: .: :.: :.. ...::. : ..:::.: ...:.:.
CCDS25 EEELHPGEVLVMLVGNKTDLSQE----REVTFQEGKEFADSQKLLFMETSAKLNHQVSEV
120 130 140 150 160 170
170 180 190 200
pF1KE3 FQKVAEDYV--SVAAFQVMTEDKGVDLGQKPNPYFYSCCHH
:. ::.. . : :.. : .: :.. : .:: :
CCDS25 FNTVAQELLQRSDEEGQALRGDAAVALNKGPARQ-AKCCAH
180 190 200 210
>>CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 (194 aa)
initn: 401 init1: 222 opt: 419 Z-score: 492.3 bits: 97.9 E(32554): 4.2e-21
Smith-Waterman score: 419; 39.1% identity (68.0% similar) in 197 aa overlap (7-201:5-194)
10 20 30 40 50
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQN-TIGAAFVAKVMSVGDRTVTL
..:: .:: :::.:.: :.:.: : : : ::::.:..:... .. .
CCDS33 MALRELKVCLLGDTGVGKSSIVWRFVEDSF--DPNINPTIGASFMTKTVQYQNELHKF
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 GIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSL-EEGCQIYLC
::::::.::..:.. .::::. :::. ::.: .: : ::::::. . . .
CCDS33 LIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 GTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAF
:.: ::.. :.: .:..::::.:.: . :::.:.. ...::: .... :. :
CCDS33 GNKCDLIDV----REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTDA-
120 130 140 150 160 170
180 190 200
pF1KE3 QVMTEDKGVDLGQKPNPYFYSCCHH
.. . :: : ..:. :::
CCDS33 NLPSGGKGFKLRRQPSEPKRSCC
180 190
>>CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 (208 aa)
initn: 381 init1: 221 opt: 401 Z-score: 471.3 bits: 94.1 E(32554): 6.3e-20
Smith-Waterman score: 401; 36.7% identity (72.3% similar) in 188 aa overlap (9-193:15-196)
10 20 30 40 50
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGD
:.:.::.. ::::::. :...: : . :: ::: :..:.: . :
CCDS30 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLED
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 RTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQ
::: : .:::::.::.... : : . .:.: ::.:. .::.... :. ..:. :.: .
CCDS30 RTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRT-ERGSD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 --IYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDY
:.: :.:.:: . .:.. ... .. : .......:::.::: .: .::..::
CCDS30 VIIMLVGNKTDLAD----KRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL
120 130 140 150 160 170
180 190 200
pF1KE3 VSVAAFQVMTEDKGVDLG-QKPNPYFYSCCHH
.. : ... .:. .::
CCDS30 PGMENVQEKSKEGMIDIKLDKPQEPPASEGGCSC
180 190 200
>>CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 (208 aa)
initn: 358 init1: 200 opt: 401 Z-score: 471.3 bits: 94.1 E(32554): 6.3e-20
Smith-Waterman score: 401; 36.7% identity (72.3% similar) in 188 aa overlap (9-193:15-196)
10 20 30 40 50
pF1KE3 MSGQRVDVKVVMLGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMSVGD
:.:.::.. ::::::. :...: : . :: ::: :..:.: . :
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLED
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 RTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELRSLEEGCQ
::. : .:::::.::.... : : . ::.: ::.:. .::... :. ..:. :.: .
CCDS82 RTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT-ERGSD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 --IYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDY
:.: :.:.:: . .:.:.... . : .......:::.:.: .: .::..::
CCDS82 VIIMLVGNKTDLAD----KRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL
120 130 140 150 160 170
180 190 200
pF1KE3 VSVAAFQVMTEDKGVDLG-QKPNPYFYSCCHH
.. . : ... .:. .::
CCDS82 PGMESTQDRSREDMIDIKLEKPQEQPVSEGGCSC
180 190 200
203 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:20:12 2016 done: Mon Nov 7 01:20:13 2016
Total Scan time: 2.030 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]