Result of FASTA (ccds) for
pFN21AE3587
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3587, 238 aa
1>>>pF1KE3587 238 - 238 aa - 238 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8037+/-0.000605; mu= 13.2222+/- 0.037
mean_var=81.8030+/-16.302, 0's: 0 Z-trim(114.1): 14 B-trim: 16 in 1/49
Lambda= 0.141804
statistics sampled from 14686 (14698) to 14686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.451), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 ( 238) 1669 350.0 8e-97
CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 ( 213) 561 123.3 1.3e-28
CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 ( 228) 541 119.2 2.3e-27
CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 ( 205) 495 109.8 1.4e-24
CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 ( 183) 437 97.9 4.8e-21
CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 ( 201) 333 76.6 1.3e-14
CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 ( 193) 332 76.4 1.5e-14
CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 ( 207) 324 74.8 4.8e-14
>>CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 (238 aa)
initn: 1669 init1: 1669 opt: 1669 Z-score: 1851.8 bits: 350.0 E(32554): 8e-97
Smith-Waterman score: 1669; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQGFKRWECNRPHAPHSPI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 KFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVPT
130 140 150 160 170 180
190 200 210 220 230
pF1KE3 LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
190 200 210 220 230
>>CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 (213 aa)
initn: 478 init1: 266 opt: 561 Z-score: 627.4 bits: 123.3 E(32554): 1.3e-28
Smith-Waterman score: 561; 53.4% identity (71.3% similar) in 174 aa overlap (2-165:4-170)
10 20 30 40 50
pF1KE3 MAAAPLL-LLLLLVPVPLLPLL-AQGPGGALGNRHAVYWNSSNQHLRRE------GYT
: ::: :::::.:.: :. :. . : ..:.::::: :: ... :::
CCDS12 MAPAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYT
10 20 30 40 50 60
60 70 80 90 100
pF1KE3 VQVNVNDYLDIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNASQ-GFKRWE
:.:..::::::::::: :: :. :.::::::. .:. .:. : ::::::
CCDS12 VEVSINDYLDIYCPHY-------GAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWE
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 CNRPHAPHSPIKFSEKFQRYSAFSLGYEFHAGHEYYYIS-TPTHNLHWKCLRMKVFVCCA
:::: :: .:.::::::: .. ::::.::. :::::::: :: . . :::.::.:
CCDS12 CNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKVYVRPT
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE3 STSHSGEKPVPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGI
CCDS12 NETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
180 190 200 210
>>CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 (228 aa)
initn: 521 init1: 258 opt: 541 Z-score: 604.9 bits: 119.2 E(32554): 2.3e-27
Smith-Waterman score: 541; 49.7% identity (77.0% similar) in 161 aa overlap (8-165:6-158)
10 20 30 40 50
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGG-ALGNRHAVYWNSSNQHLRREGYTVQVNVNDYL
.: :. : . ...: ::. :...:.:::::::: ...: : ..: .::::
CCDS40 MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYL
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 DIYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCN-ASQGFKRWECNRPHAPHS
:..::::..: : .:.::::::. .:: .:. .:.:::::::::::.:..
CCDS40 DVFCPHYEDSV--------PEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNG
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPT-HNLHWKCLRMKVFVCCASTSHSGEKP
:.::::::: .. ::::.::. :.::.:::. : . .::..::::
CCDS40 PLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFVRPTNSCMKTIGV
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 VPTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLA
CCDS40 HDRVFDVNDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
180 190 200 210 220
>>CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 (205 aa)
initn: 503 init1: 271 opt: 495 Z-score: 554.7 bits: 109.8 E(32554): 1.4e-24
Smith-Waterman score: 504; 40.3% identity (66.1% similar) in 221 aa overlap (19-238:7-204)
10 20 30 40 50 60
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
:::. . : ..::.:.::::: ..: : ::..:..:::.:
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVD
10 20 30 40
70 80 90 100 110
pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSP
: ::::.. .:. .: :::.::.: .. :. :. :. ::.:::: : :.:
CCDS10 IICPHYEDHSVADAA-------MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 IKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVP
:.::::::.. :.:: ::. :: ::::: : :. . .:::.:: : .. .::
CCDS10 EKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVS-GKITHS------
110 120 130 140 150
180 190 200 210 220 230
pF1KE3 TLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
:: .:. : . ...:.: .. .:: : : . .::: . .. . .: .
CCDS10 --PQAHDNPQEK-----RLAADDPEV-RVLHSI-GHSAAPRLFPLAWTVLLLPLLLLQTP
160 170 180 190 200
>>CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 (183 aa)
initn: 448 init1: 216 opt: 437 Z-score: 491.3 bits: 97.9 E(32554): 4.8e-21
Smith-Waterman score: 437; 49.6% identity (74.0% similar) in 131 aa overlap (19-148:7-130)
10 20 30 40 50 60
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
:::. . : ..::.:.::::: ..: : ::..:..:::.:
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVD
10 20 30 40
70 80 90 100 110
pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSP
: ::::.. .:. .: :::.::.: .. :. :. :. ::.:::: : :.:
CCDS10 IICPHYEDHSVADAA-------MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGP
50 60 70 80 90 100
120 130 140 150 160 170
pF1KE3 IKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVP
:.::::::.. :.:: ::. :: :::::
CCDS10 EKLSEKFQRFTPFTLGKEFKEGHSYYYISHSPQAHDNPQEKRLAADDPEVRVLHSIGHSA
110 120 130 140 150 160
>>CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 (201 aa)
initn: 378 init1: 218 opt: 333 Z-score: 375.7 bits: 76.6 E(32554): 1.3e-14
Smith-Waterman score: 474; 45.1% identity (67.6% similar) in 173 aa overlap (8-178:3-164)
10 20 30 40 50 60
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
:: :: : .:.. :. . ::.::::::: .: : .:....:::::
CCDS10 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD
10 20 30 40 50
70 80 90 100 110
pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHS
: ::::. :::: : : ..::::. ::..:.: ...::: :. : . :
CCDS10 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H-
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV
..::::.::.. ::::.:: :. :::::.:: . .:::..: ::: . . .::
CCDS10 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPV
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
CCDS10 GSPGESGTSGWRGGDTPSPLCLLLLLLLLILRLLRIL
170 180 190 200
>>CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 (193 aa)
initn: 385 init1: 209 opt: 332 Z-score: 374.9 bits: 76.4 E(32554): 1.5e-14
Smith-Waterman score: 476; 40.7% identity (63.4% similar) in 216 aa overlap (8-221:3-193)
10 20 30 40 50 60
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
:: :: : .:.. :. . ::.::::::: .: : .:....:::::
CCDS41 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD
10 20 30 40 50
70 80 90 100 110
pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHS
: ::::. :::: : : ..::::. ::..:.: ...::: :. : . :
CCDS41 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H-
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV
..::::.::.. ::::.:: :. :::::.:: . .:::..: ::: :. .
CCDS41 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCK------ERNL
110 120 130 140 150
180 190 200 210 220 230
pF1KE3 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
:. :. :. . . ::. :. .: : .. . : ::
CCDS41 PSHPKE---PESSQDPLEE---EGSLLPAL--GVPIQTDKMEH
160 170 180 190
>>CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 (207 aa)
initn: 406 init1: 209 opt: 324 Z-score: 365.6 bits: 74.8 E(32554): 4.8e-14
Smith-Waterman score: 465; 46.9% identity (69.1% similar) in 162 aa overlap (8-167:3-153)
10 20 30 40 50 60
pF1KE3 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
:: :: : .:.. :. . ::.::::::: .: : .:....:::::
CCDS44 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLD
10 20 30 40 50
70 80 90 100 110
pF1KE3 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHS
: ::::. :::: : : ..::::. ::..:.: ...::: :. : . :
CCDS44 IVCPHYE--------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFG-H-
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 PIKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPV
..::::.::.. ::::.:: :. :::::.:: . .:::..: :::
CCDS44 -VQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 PTLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
CCDS44 PGGGGIPAACTGGANSDRQDGALMGEIRGSEVTLAGACPLITG
170 180 190 200
238 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:00:24 2016 done: Mon Nov 7 01:00:24 2016
Total Scan time: 1.870 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]