Result of FASTA (ccds) for
pFN21AE3586
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3586, 205 aa
1>>>pF1KE3586 205 - 205 aa - 205 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6019+/-0.000698; mu= 11.8848+/- 0.042
mean_var=64.2682+/-13.127, 0's: 0 Z-trim(109.2): 15 B-trim: 0 in 0/51
Lambda= 0.159984
statistics sampled from 10737 (10749) to 10737 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.33), width: 16
Scan time: 1.760
The best scores are: opt bits E(32554)
CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 ( 205) 1420 335.9 1e-92
CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 ( 183) 941 225.3 1.8e-59
CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 ( 228) 503 124.3 5.9e-29
CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 ( 238) 502 124.1 7.2e-29
CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 ( 213) 457 113.6 8.7e-26
CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 ( 201) 435 108.6 2.8e-24
CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 ( 193) 434 108.3 3.2e-24
CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 ( 207) 421 105.3 2.7e-23
CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX ( 346) 244 64.6 8.5e-11
>>CCDS1091.1 EFNA1 gene_id:1942|Hs108|chr1 (205 aa)
initn: 1420 init1: 1420 opt: 1420 Z-score: 1777.9 bits: 335.9 E(32554): 1e-92
Smith-Waterman score: 1420; 99.0% identity (99.5% similar) in 205 aa overlap (1-205:1-205)
10 20 30 40 50 60
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPEVRVLHSIA
:::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::.
CCDS10 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHDNPQEKRLAADDPEVRVLHSIG
130 140 150 160 170 180
190 200
pF1KE3 HSAAPRLFPLAWTVLLLPLLLLQTP
:::::::::::::::::::::::::
CCDS10 HSAAPRLFPLAWTVLLLPLLLLQTP
190 200
>>CCDS1092.1 EFNA1 gene_id:1942|Hs108|chr1 (183 aa)
initn: 939 init1: 939 opt: 941 Z-score: 1181.2 bits: 225.3 E(32554): 1.8e-59
Smith-Waterman score: 1217; 88.3% identity (88.8% similar) in 205 aa overlap (1-205:1-183)
10 20 30 40 50 60
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 KEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPEVRVLHSIA
:::::::::: :::::: ::::::::::::::::::::.
CCDS10 KEGHSYYYIS----------------------HSPQAHDNPQEKRLAADDPEVRVLHSIG
130 140 150
190 200
pF1KE3 HSAAPRLFPLAWTVLLLPLLLLQTP
:::::::::::::::::::::::::
CCDS10 HSAAPRLFPLAWTVLLLPLLLLQTP
160 170 180
>>CCDS4097.1 EFNA5 gene_id:1946|Hs108|chr5 (228 aa)
initn: 504 init1: 275 opt: 503 Z-score: 633.3 bits: 124.3 E(32554): 5.9e-29
Smith-Waterman score: 503; 48.1% identity (74.1% similar) in 158 aa overlap (14-170:25-179)
10 20 30 40
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDI
: :.:::..:.::::::.:. :: : : .:::.:.
CCDS40 MLHVEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 ICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQ
.:::::: :: . :.:.::.:. . :. :. :: ::.:::: . .:: :.:::::
CCDS40 FCPHYED-SVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQ
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 RFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAHVNPQEKRLAA
::::.:: ::. :. :.:::. : .. : ::.::: : . :.: . .. ... . .
CCDS40 LFTPFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFV--RPTNSCMKTIGVHDRVFDV
120 130 140 150 160 170
170 180 190 200
pF1KE3 DDPEVRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
.:
CCDS40 NDKVENSLEPADDTVHESAEPSRGENAAQTPRIPSRLLAILLFLLAMLLTL
180 190 200 210 220
>>CCDS1090.1 EFNA3 gene_id:1944|Hs108|chr1 (238 aa)
initn: 503 init1: 271 opt: 502 Z-score: 631.8 bits: 124.1 E(32554): 7.2e-29
Smith-Waterman score: 510; 39.4% identity (66.5% similar) in 221 aa overlap (7-204:19-238)
10 20 30 40
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVD
:::. . : ..::.:.::::: ..: : ::..:..:::.:
CCDS10 MAAAPLLLLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLD
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 IICPHYEDHSVADAA-------MEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGP
: ::::.. .:. .: :::.::.: .. :. :. :. ::.:::: : :.:
CCDS10 IYCPHYNSSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNA-SQGFKRWECNRPHAPHSP
70 80 90 100 110
110 120 130 140 150
pF1KE3 EKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVS-GKITHS------
:.::::::.. :.:: ::. :: ::::: : :. . .:::.:: : .. .::
CCDS10 IKFSEKFQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCCASTSHSGEKPVP
120 130 140 150 160 170
160 170 180 190 200
pF1KE3 --PQAHVNPQEK-----RLAADDPEVRVLHSIAHSAAPRL--FPLAWTVLLLPLLLLQTP
:: ..:. : . ...:.: :.. ...:. .::: . .. . .: .
CCDS10 TLPQFTMGPNVKINVLEDFEGENPQVPKLEKSISGTSPKREHLPLAVGIAFFLMTFLAS
180 190 200 210 220 230
>>CCDS12061.1 EFNA2 gene_id:1943|Hs108|chr19 (213 aa)
initn: 470 init1: 362 opt: 457 Z-score: 576.4 bits: 113.6 E(32554): 8.7e-26
Smith-Waterman score: 467; 42.7% identity (62.5% similar) in 192 aa overlap (16-195:32-211)
10 20 30
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFR---NED---YTI
: .::..:.:: :::.:. ..: ::.
CCDS12 APAQRPLLPLLLLLLPLPPPPFARAEDAARANSDRYAVYWNRSNPRFHAGAGDDGGGYTV
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE3 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKH
.:..:::.:: :::: ::.:.::.:. : . :. ... ::.::::.:
CCDS12 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPG
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE3 GPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDR-CLRLKVTVSGKITHSPQAH
:: :.::::: ::::.:: ::. :: ::::: . :: :::::: .
CCDS12 GPLKFSEKFQLFTPFSLGFEFRPGHEYYYISATPPNAVDRPCLRLKV------------Y
130 140 150 160
160 170 180 190 200
pF1KE3 VNPQEKRL-AADDPEVRVLHSIAHSAAPRLF----PLAWTVLLLPLLLLQTP
: : .. : : .: .: . .. ::: :. ::.:
CCDS12 VRPTNETLYEAPEPIFTSNNSCSSPGGCRLFLSTIPVLWTLLGS
170 180 190 200 210
>>CCDS1089.1 EFNA4 gene_id:1945|Hs108|chr1 (201 aa)
initn: 427 init1: 196 opt: 435 Z-score: 549.4 bits: 108.6 E(32554): 2.8e-24
Smith-Waterman score: 435; 43.6% identity (67.3% similar) in 156 aa overlap (4-158:11-162)
10 20 30 40 50
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
::: .:: ... ::.:.::::::.. : .... ::::.::.:::
CCDS10 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
:: . .. : . ::.:. :. :: .. . :: :. : : ..:::.::::
CCDS10 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPE
::.:: :: :..::::: : . .::::.:.: : .: .::
CCDS10 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESGTSGWR
120 130 140 150 160 170
180 190 200
pF1KE3 VRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
CCDS10 GGDTPSPLCLLLLLLLLILRLLRIL
180 190 200
>>CCDS41407.1 EFNA4 gene_id:1945|Hs108|chr1 (193 aa)
initn: 389 init1: 196 opt: 434 Z-score: 548.4 bits: 108.3 E(32554): 3.2e-24
Smith-Waterman score: 434; 42.0% identity (66.9% similar) in 169 aa overlap (4-171:11-171)
10 20 30 40 50
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
::: .:: ... ::.:.::::::.. : .... ::::.::.:::
CCDS41 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
:: . .. : . ::.:. :. :: .. . :: :. : : ..:::.::::
CCDS41 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPE
::.:: :: :..::::: : . .::::.:.: : . : .: :.: . ...::
CCDS41 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLP-SH--PKEPE-SSQDPL
120 130 140 150 160 170
180 190 200
pF1KE3 VRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
CCDS41 EEEGSLLPALGVPIQTDKMEH
180 190
>>CCDS44237.1 EFNA4 gene_id:1945|Hs108|chr1 (207 aa)
initn: 389 init1: 196 opt: 421 Z-score: 531.7 bits: 105.3 E(32554): 2.7e-23
Smith-Waterman score: 421; 43.9% identity (67.6% similar) in 148 aa overlap (4-150:11-154)
10 20 30 40 50
pF1KE3 MEFLWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPH
::: .:: ... ::.:.::::::.. : .... ::::.::.:::
CCDS44 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 YEDHSVADAAMEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFT
:: . .. : . ::.:. :. :: .. . :: :. : : ..:::.::::
CCDS44 YEGPGPPEGP-ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFT
70 80 90 100 110
120 130 140 150 160 170
pF1KE3 PFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDPE
::.:: :: :..::::: : . .::::.:.: :
CCDS44 PFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSPGGGGIPAACTG
120 130 140 150 160 170
180 190 200
pF1KE3 VRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
CCDS44 GANSDRQDGALMGEIRGSEVTLAGACPLITG
180 190 200
>>CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX (346 aa)
initn: 221 init1: 91 opt: 244 Z-score: 307.3 bits: 64.6 E(32554): 8.5e-11
Smith-Waterman score: 244; 32.4% identity (56.6% similar) in 173 aa overlap (2-163:11-175)
10 20 30 40
pF1KE3 MEFLWAPLLGLCCSLA---AADRHTVFWNSSNPKF-RNEDYTIHVQLNDYV
..: : .. : :: : . . : :.: :::: .. .:. ...: .
CCDS14 MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 DIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEK
:::::. : : .: : ::::. :. :. .: :::: . ... :
CCDS14 DIICPRAE----AGRPYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEI---RFTIK
70 80 90 100 110
110 120 130 140 150 160
pF1KE3 FQRFTPFTLGKEFKEGHSYYYISKP---IHQHEDR----CLRLKVTVSGKITHSPQAHVN
::.:.: .: :::. :.:: : .. :.: : . . :. ..:.: :.
CCDS14 FQEFSPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNA-VT
120 130 140 150 160 170
170 180 190 200
pF1KE3 PQEKRLAADDPEVRVLHSIAHSAAPRLFPLAWTVLLLPLLLLQTP
:..
CCDS14 PEQLTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDG
180 190 200 210 220 230
205 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:57:03 2016 done: Sun Nov 6 01:57:03 2016
Total Scan time: 1.760 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]