FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3584, 433 aa
  1>>>pF1KE3584 433 - 433 aa - 433 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1828+/-0.000925; mu= 12.9149+/- 0.056
 mean_var=73.8941+/-14.599, 0's: 0 Z-trim(106.2): 17  B-trim: 0 in 0/50
 Lambda= 0.149200
 statistics sampled from 8839 (8843) to 8839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.272), width:  16
 Scan time:  1.990

The best scores are:                                      opt bits E(32554)
CCDS9904.1 LGMN gene_id:5641|Hs108|chr14           ( 433) 2965 647.6  7e-186
CCDS674.1 PIGK gene_id:10026|Hs108|chr1            ( 395)  373 89.6 5.7e-18


>>CCDS9904.1 LGMN gene_id:5641|Hs108|chr14                (433 aa)
 initn: 2965 init1: 2965 opt: 2965  Z-score: 3450.7  bits: 647.6 E(32554): 7e-186
Smith-Waterman score: 2965; 99.8% identity (100.0% similar) in 433 aa overlap (1-433:1-433)

               10        20        30        40        50        60
pF1KE3 MVWKVAVFLSVALGIGAIPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS99 MVWKVAVFLSVALGIGAVPIDDPEDGGKHWVVIVAGSNGWYNYRHQADACHAYQIIHRNG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 IPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGTDVYQGVPKDYTGEDVTPQNFLAVLRGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPNEDLHVKDLNETIHYMYKHKMYR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYYDEKRSTYLGDWYSVNWMED
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVMQFQGMKRKASSPVPLPPVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 HLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 HLDLTPSPDVPLTIMKRKLMNTNDLEESRQLTEEIQRHLDARHLIEKSVRKIVSLLAASE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 AEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPLHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AEVEQLLSERAPLTGHSCYPEALLHFRTHCFNWHSPTYEYALRHLYVLVNLCEKPYPLHR
              370       380       390       400       410       420

              430   
pF1KE3 IKLSMDHVCLGHY
       :::::::::::::
CCDS99 IKLSMDHVCLGHY
              430   

>>CCDS674.1 PIGK gene_id:10026|Hs108|chr1                 (395 aa)
 initn: 216 init1: 170 opt: 373  Z-score: 436.0  bits: 89.6 E(32554): 5.7e-18
Smith-Waterman score: 373; 31.0% identity (65.7% similar) in 245 aa overlap (5-239:14-255)

                        10         20              30        40    
pF1KE3          MVWKVAVFLSVALG-IGAIPIDDPED----GGK--HWVVIVAGSNGWYNYR
                    .:. : ...: ..:  :.:  .    .:.  .:.:.:  :  :.:::
CCDS67 MAVTDSLSRAATVLATVLLLSFGSVAASHIEDQAEQFFRSGHTNNWAVLVCTSRFWFNYR
               10        20        30        40        50        60

           50        60        70        80        90         100  
pF1KE3 HQADACHAYQIIHRNGIPDEQIVVMMYDDIAYSEDNPTPGIVINRPNGT-DVY-QGVPKD
       : :..  .:. ..: :::: .::.:. ::.: .  :: :. :... :   .:: . :  :
CCDS67 HVANTLSVYRSVKRLGIPDSHIVLMLADDMACNPRNPKPATVFSHKNMELNVYGDDVEVD
               70        80        90       100       110       120

            110       120       130       140       150        160 
pF1KE3 YTGEDVTPQNFLAVLRGDAEAVKGIGSGKVLKSGPQDHVFIYFTDHGSTGILVFPN-EDL
       : . .:: .::: :: :  .   .   .: : :  .....::.: ::..:.: : . :..
CCDS67 YRSYEVTVENFLRVLTG--RIPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEI
              130         140       150       160       170        

             170       180       190       200       210       220 
pF1KE3 HVKDLNETIHYMYKHKMYRKMVFYIEACESGSMMNHLPDNINVYATTAANPRESSYACYY
          .: .... :.... : ...: :..:...::.... .  :..: ....  :.: .   
CCDS67 TNIELADAFEQMWQKRRYNELLFIIDTCQGASMYERFYSP-NIMALASSQVGEDSLSHQP
      180       190       200       210        220       230       

             230       240       250       260       270       280 
pF1KE3 DEKRSTYLGDWYSVNWMEDSDVEDLTKETLHKQYHLVKSHTNTSHVMQYGNKTISTMKVM
       :   ...: : :.   .:                                          
CCDS67 DPAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRTDLFQRDPKN
       240       250       260       270       280       290       




433 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:34:07 2016 done: Mon Nov  7 02:34:07 2016
 Total Scan time:  1.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]