FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3540, 302 aa
  1>>>pF1KE3540 302 - 302 aa - 302 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4559+/-0.000647; mu= 14.7465+/- 0.039
 mean_var=62.2946+/-12.393, 0's: 0 Z-trim(110.3): 14  B-trim: 0 in 0/50
 Lambda= 0.162498
 statistics sampled from 11500 (11506) to 11500 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.733), E-opt: 0.2 (0.353), width:  16
 Scan time:  2.220

The best scores are:                                      opt bits E(32554)
CCDS125.1 SRM gene_id:6723|Hs108|chr1              ( 302) 2073 494.0 5.7e-140


>>CCDS125.1 SRM gene_id:6723|Hs108|chr1                   (302 aa)
 initn: 2073 init1: 2073 opt: 2073  Z-score: 2626.4  bits: 494.0 E(32554): 5.7e-140
Smith-Waterman score: 2073; 100.0% identity (100.0% similar) in 302 aa overlap (1-302:1-302)

               10        20        30        40        50        60
pF1KE3 MEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MEPGPDGPAASGPAAIREGWFRETCSLWPGQALSLQVEQLLHHRRSRYQDILVFRSKTYG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 NVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NVLVLDGVIQCTERDEFSYQEMIANLPLCSHPNPRKVLIIGGGDGGVLREVVKHPSVESV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSDPMGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 AESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYCTIPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 YPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKALND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YPSGQIGFMLCSKNPSTNFQEPVQPLTQQQVAQMQLKYYNSDVHRAAFVLPEFARKALND
              250       260       270       280       290       300

         
pF1KE3 VS
       ::
CCDS12 VS
         




302 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:42:26 2016 done: Mon Nov  7 14:42:27 2016
 Total Scan time:  2.220 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]