Result of FASTA (omim) for
pFN21AE3520
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3520, 293 aa
1>>>pF1KE3520 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2348+/-0.000282; mu= 9.2583+/- 0.018
mean_var=178.7466+/-36.805, 0's: 0 Z-trim(124.1): 256 B-trim: 2285 in 1/57
Lambda= 0.095930
statistics sampled from 44966 (45251) to 44966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.531), width: 16
Scan time: 9.090
The best scores are: opt bits E(85289)
NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 ( 364) 1860 268.7 1.2e-71
XP_011537672 (OMIM: 606727) PREDICTED: homeobox pr ( 194) 825 125.2 1e-28
NP_004378 (OMIM: 108900,187500,217095,225250,60058 ( 324) 724 111.4 2.3e-24
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 679 105.2 1.7e-22
XP_006723629 (OMIM: 604612) PREDICTED: homeobox pr ( 202) 491 79.0 8.6e-15
NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 ( 273) 491 79.1 1.1e-14
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 474 76.9 6.5e-14
NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 ( 239) 428 70.3 4.1e-12
NP_001180 (OMIM: 602183,613330) homeobox protein N ( 333) 374 63.0 9.1e-10
NP_003308 (OMIM: 118700,188550,600635,610978) home ( 371) 351 59.8 8.9e-09
NP_001073136 (OMIM: 118700,188550,600635,610978) h ( 401) 351 59.9 9.4e-09
NP_001099044 (OMIM: 613380) homeobox protein HMX3 ( 357) 324 56.1 1.2e-07
NP_061815 (OMIM: 142992,612109) homeobox protein H ( 348) 310 54.1 4.4e-07
NP_001243268 (OMIM: 602041) homeobox protein Nkx-3 ( 159) 304 53.0 4.5e-07
NP_006158 (OMIM: 602041) homeobox protein Nkx-3.1 ( 234) 303 53.0 6.5e-07
NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 284 50.5 5.1e-06
NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 278 49.6 7.8e-06
NP_005510 (OMIM: 600647) homeobox protein HMX2 [Ho ( 273) 278 49.6 7.9e-06
XP_005269800 (OMIM: 600647) PREDICTED: homeobox pr ( 273) 278 49.6 7.9e-06
NP_002439 (OMIM: 106600,142983,189500,608874) home ( 303) 271 48.7 1.7e-05
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 267 48.0 2e-05
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 267 48.1 2.3e-05
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 268 48.4 2.8e-05
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 268 48.4 2.8e-05
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 264 47.7 3.1e-05
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 263 47.7 4.7e-05
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 263 47.7 4.7e-05
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 263 47.7 4.7e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 259 47.0 5.2e-05
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 259 47.1 5.9e-05
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 259 47.1 5.9e-05
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 252 45.8 6.7e-05
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 252 45.8 6.7e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 259 47.2 6.7e-05
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 259 47.2 6.7e-05
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 259 47.2 6.7e-05
>>NP_660328 (OMIM: 606727) homeobox protein Nkx-2.3 [Hom (364 aa)
initn: 1860 init1: 1860 opt: 1860 Z-score: 1407.3 bits: 268.7 E(85289): 1.2e-71
Smith-Waterman score: 1860; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)
10 20 30 40 50 60
pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_660 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAGPPRRPLPCSPPAARPEAAPL
::::::::::::::::::::::::::::::::
NP_660 PSAQAYGAPYSVGASAYSYNSFPAYGYGNSAAAAAAAAAAAAAAAAYSSSYGCAYPAGGG
250 260 270 280 290 300
NP_660 GGGGGTSAATTAMQPACSAAGGGPFVNVSNLGGFGSGGSAQPLHQGTAAGAACAQGTLQG
310 320 330 340 350 360
>>XP_011537672 (OMIM: 606727) PREDICTED: homeobox protei (194 aa)
initn: 851 init1: 825 opt: 825 Z-score: 636.6 bits: 125.2 E(85289): 1e-28
Smith-Waterman score: 825; 98.3% identity (100.0% similar) in 121 aa overlap (1-121:1-121)
10 20 30 40 50 60
pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_011 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH
.
XP_011 AQDPNKHALTTPLHETRLRLLRAFFGYWGCLRVPQRQEPQTFPKVQPFTTARSAQPPKRV
130 140 150 160 170 180
>>NP_004378 (OMIM: 108900,187500,217095,225250,600584,61 (324 aa)
initn: 611 init1: 491 opt: 724 Z-score: 558.3 bits: 111.4 E(85289): 2.3e-24
Smith-Waterman score: 837; 51.5% identity (69.1% similar) in 301 aa overlap (2-291:1-286)
10 20 30 40 50
pF1KE3 MMLPSP-VTSTPFSVKDILNLEQQHQHFHGA-HLQADLEHHFHSAPCMLAAAEGTQFSDG
:.::: .: ::::::::::::::.. . .: .:.: :: . . ::::: . ..
NP_004 MFPSPALTPTPFSVKDILNLEQQQRSLAAAGELSARLEATLAPSSCMLAAFKPEAYA--
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 GEEDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRD-R
: : : : : : :.. : : . . :. . . :. ..: :
NP_004 GPEAAAP-G-----LPELRAELGRAPS---PAKCASAFPAAPAFYPRAYSD-PDPAKDPR
60 70 80 90 100
120 130 140 150 160 170
pF1KE3 SQKS--CQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSA
..:. : :.:..: . :...:::. : :::::::::::::.::::::::::::::
NP_004 AEKKELCALQKAVEL--EKTEADNAERPRARRRRKPRVLFSQAQVYELERRFKQQRYLSA
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE3 PEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLEL-GAHAPPPPP-RRVAVPVLVR
:::..::: :::::::::::::::::::::::::..::: : ::::: ::.:::::::
NP_004 PERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPPPPARRIAVPVLVR
170 180 190 200 210 220
240 250 260 270 280
pF1KE3 DGKPCVTPSAQAYGAPYSVGASAYSYNSFPAY-GYGNSAAGPPRR---PLPCSPPAARPE
:::::. :: :. :.:: . :.::..::: :::..: .: : .: :.:
NP_004 DGKPCLGDSAP-YAPAYGVGLNPYGYNAYPAYPGYGGAACSPGYSCTAAYPAGPSPAQPA
230 240 250 260 270 280
290
pF1KE3 AAPL
.:
NP_004 TAAANNNFVNFGVGDLNAVQSPGIPQSNSGVSTLHGIRAW
290 300 310 320
>>NP_001129743 (OMIM: 217095,611770) homeobox protein Nk (301 aa)
initn: 658 init1: 510 opt: 679 Z-score: 525.0 bits: 105.2 E(85289): 1.7e-22
Smith-Waterman score: 745; 48.6% identity (68.8% similar) in 292 aa overlap (2-286:1-275)
10 20 30 40 50 60
pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
:: :::::::::::::: ::.... : : : . . :. :. .
NP_001 MLLSPVTSTPFSVKDILRLERERS------CPAASPH-----PRVRKSPENFQYL---R
10 20 30 40
70 80 90 100 110 120
pF1KE3 EDEEDEGEKLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRDRSQK
: : .: .. .. ...: . :.. : : ..::. . . : . ... .
NP_001 MDAEPRGSEVHNAGG-GGGDRKLDGSEPPGGPCEAVLEMDAERMGEPQPGLNAASPLGGG
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 SCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREH
. .... ..:: . .::.:: :.:::::::::::::. ::::::::::::::::::
NP_001 TRVPERGVGNSGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 LASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVT
:::.:.::::::::::::::::::::::::::::..: : ::::::::::::::::.
NP_001 LASALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGH--PLTPRRVAVPVLVRDGKPCLG
170 180 190 200 210 220
250 260 270 280 290
pF1KE3 PS--AQAYGAPYSVGASAYS----YNSFP-AYGYGNSAAGPPRRPLPCSPPAARPEAAPL
:. : :. .:::...: :: :.. : . :::. :: : : : .: :.
NP_001 PGPGAPAFPSPYSAAVSPYSCYGGYSGAPYGAGYGTCYAGAPSGPAPHTPLASAGFGHGG
230 240 250 260 270 280
NP_001 QNATPQGHLAATLQGVRAW
290 300
>>XP_006723629 (OMIM: 604612) PREDICTED: homeobox protei (202 aa)
initn: 442 init1: 334 opt: 491 Z-score: 386.5 bits: 79.0 E(85289): 8.6e-15
Smith-Waterman score: 491; 53.7% identity (74.1% similar) in 162 aa overlap (126-278:31-189)
100 110 120 130 140 150
pF1KE3 VLRDSCSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERP----KPRSRRKP
:: : ..: . ...: : ..::
XP_006 MIFSATSPPKFSPTLLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGGGGDAGKKRKR
10 20 30 40 50 60
160 170 180 190 200 210
pF1KE3 RVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKS
:::::.::..::::::.::::::::::::::: ..:: :::::::::.::: :: : .:.
XP_006 RVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKG
70 80 90 100 110 120
220 230 240 250 260
pF1KE3 LELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAP-YSVGA--SAYSYNSFPAYGYG
.:. .: : :::::::::::::::: . .:: .: ...: :::: .:. . :.
XP_006 MEV---TPLPSPRRVAVPVLVRDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYN
130 140 150 160 170
270 280 290
pF1KE3 N--SAAGPPRRPLPCSPPAARPEAAPL
:.:. :. :
XP_006 AQYSSASTPQYPTAHPLVQAQQWTW
180 190 200
>>NP_002500 (OMIM: 604612) homeobox protein Nkx-2.2 [Hom (273 aa)
initn: 477 init1: 334 opt: 491 Z-score: 384.9 bits: 79.1 E(85289): 1.1e-14
Smith-Waterman score: 495; 40.5% identity (60.9% similar) in 284 aa overlap (8-278:6-260)
10 20 30 40 50 60
pF1KE3 MMLPSPVTSTPFSVKDILNLEQQHQHFHGAHLQADLEHHFHSAPCMLAAAEGTQFSDGGE
:.: :::::::.: . . : : ..::: . . :
NP_002 MSLTNTKTGFSVKDILDLPDTN----------DEEG---------SVAEGPEEENEGP
10 20 30
70 80 90 100 110
pF1KE3 EDEEDEGE----KLSYLNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVVRD
: . : :. ..:: . ::. : :.. . . .: .. . ..
NP_002 EPAKRAGPLGQGALDAVQSLPLKNPFYDSSDNP--YTRWL---ASTEGLQYSLHGLAAGA
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE3 RSQKSCQLKKSLETAGDCKAAEESERP----KPRSRRKPRVLFSQAQVFELERRFKQQRY
: : . :: : ..: . ...: : ..:: :::::.::..::::::.::::
NP_002 PPQDSSS--KSPEPSADESPDNDKETPGGGGDAGKKRKRRVLFSKAQTYELERRFRQQRY
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 LSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPPPPPRRVAVPVLV
::::::::::: ..:: :::::::::.::: :: : .:..:. .: : ::::::::::
NP_002 LSAPEREHLASLIRLTPTQVKIWFQNHRYKMKRARAEKGMEV---TPLPSPRRVAVPVLV
160 170 180 190 200
240 250 260 270 280
pF1KE3 RDGKPCVTPSAQAYGAP-YSVGA--SAYSYNSFPAYGYGN--SAAGPPRRPLPCSPPAAR
:::::: . .:: .: ...: :::: .:. . :. :.:. :. :
NP_002 RDGKPCHALKAQDLAAATFQAGIPFSAYSAQSLQHMQYNAQYSSASTPQYPTAHPLVQAQ
210 220 230 240 250 260
290
pF1KE3 PEAAPL
NP_002 QWTW
270
>>NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 [Hom (354 aa)
initn: 519 init1: 342 opt: 474 Z-score: 370.8 bits: 76.9 E(85289): 6.5e-14
Smith-Waterman score: 474; 51.5% identity (66.7% similar) in 171 aa overlap (129-291:174-336)
100 110 120 130 140 150
pF1KE3 DSCSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQA
.. : .:: . : ::: :::::::
NP_149 RYSSISRFMGPSAGVNVAGMGSLTGIADAAKSLGPLHAAAAAAAP----RRKRRVLFSQA
150 160 170 180 190
160 170 180 190 200 210
pF1KE3 QVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLE-----
::.:::::::::.:::::::::::: ..:: :::::::::.::: ::: .::. .
NP_149 QVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQLQQE
200 210 220 230 240 250
220 230 240 250 260 270
pF1KE3 --LGAHAPPPP-PRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASAYSYNSFPAYGYGNS
:: :::: ::::::::::.::::: .. . .: ..: . . . :: .
NP_149 GGLGPPPPPPPSPRRVAVPVLVKDGKPC--QNGASTPTPGQAGPQPPAPT--PAPELEEL
260 270 280 290 300 310
280 290
pF1KE3 AAGPPRRPLPCSPPAARPEAAPL
. .:: : . :: ::
NP_149 SPSPPALHGPGGGLAALDAAAGEYSGGVLGANLLYGRTW
320 330 340 350
>>NP_055175 (OMIM: 603245) homeobox protein Nkx-2.8 [Hom (239 aa)
initn: 390 init1: 293 opt: 428 Z-score: 338.5 bits: 70.3 E(85289): 4.1e-12
Smith-Waterman score: 446; 45.9% identity (63.9% similar) in 205 aa overlap (103-283:31-232)
80 90 100 110 120
pF1KE3 LNSLAAADGHGDSGLCPQGYVHTVLRDSCSEPKEHEEEPEVV---RDRSQKSCQLKKSLE
::. . .: .. .:.. . ..:::
NP_055 MATSGRLSFTVRSLLDLPEQDAQHLPRREPEPRAPQPDPCAAWLDSERGHYPSSDESSLE
10 20 30 40 50 60
130 140 150 160 170 180
pF1KE3 TAGDCKAAEESERP-KPRS----RRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASS
:. .. . : :: .: : :.: :::::.::..::::::.:::::::::::.:::
NP_055 TSPPDSSQRPSARPASPGSDAEKRKKRRVLFSKAQTLELERRFRQQRYLSAPEREQLASL
70 80 90 100 110 120
190 200 210 220 230
pF1KE3 LKLTSTQVKIWFQNRRYKCKRQRQD---KSLELGA----HAPPPPPRRVAVPVLVRDGKP
:.:: :::::::::.::: :: : .: .:.: :: : :::.::::::::.:
NP_055 LRLTPTQVKIWFQNHRYKLKRARAPGAAESPDLAASAELHAAPGLLRRVVVPVLVRDGQP
130 140 150 160 170 180
240 250 260 270 280
pF1KE3 CV--------TPSAQAY-GAPYSVGASAYSYNSFPAYGYGNSAAGPPRRPLPCSPPAARP
: : .:: ::: :.: ..::.: :.. . : ::
NP_055 CGGGGGGEVGTAAAQEKCGAP---PAAACPLPGYPAFGPGSALGLFPAYQHLASPALVSW
190 200 210 220 230
290
pF1KE3 EAAPL
NP_055 NW
>>NP_001180 (OMIM: 602183,613330) homeobox protein Nkx-3 (333 aa)
initn: 348 init1: 295 opt: 374 Z-score: 296.3 bits: 63.0 E(85289): 9.1e-10
Smith-Waterman score: 374; 48.3% identity (67.6% similar) in 145 aa overlap (131-272:190-328)
110 120 130 140 150 160
pF1KE3 CSEPKEHEEEPEVVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRSRRKPRVLFSQAQV
:: . :: ::::..:. :. ::.:::
NP_001 PRTEDDGVGPRGAHVSALCSGAGGGGGSGPAGVAEEEEEPAAPKPRKKRS-RAAFSHAQV
160 170 180 190 200 210
170 180 190 200 210 220
pF1KE3 FELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLELGAHAPP
:::::::..:::::.::: ::.::::: ::::::::::::: ::... .: :
NP_001 FELERRFNHQRYLSGPERADLAASLKLTETQVKIWFQNRRYKTKRRQMAADLL----ASA
220 230 240 250 260 270
230 240 250 260 270
pF1KE3 PPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA---YSYNSFPAYGYGNSAAGPPRR
: ..::: ::::: . :. .. : . . : : .:... .. ::
NP_001 PAAKKVAVKVLVRDDQRQYLPG-EVLRPPSLLPLQPSYYYPYYCLPGWALSTCAAAAGTQ
280 290 300 310 320 330
280 290
pF1KE3 PLPCSPPAARPEAAPL
>>NP_003308 (OMIM: 118700,188550,600635,610978) homeobox (371 aa)
initn: 548 init1: 342 opt: 351 Z-score: 278.5 bits: 59.8 E(85289): 8.9e-09
Smith-Waterman score: 464; 36.3% identity (56.0% similar) in 339 aa overlap (2-292:1-337)
10 20 30 40 50
pF1KE3 MMLPSPVTSTPFSVKDILN-LEQQHQH--FHGAHLQADLEHHFH--SAP---CMLAAAEG
: :: .:::::.:::. ::..... ..:. : : : . . .:: : : :
NP_003 MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPTAAMQQHAVG
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 TQFSDGGEEDEEDEG-EKLSYLNSLAAADGH-GDSGLCPQGYVHTVLRDSCSEPKEHEEE
. . . : .::. . .:. :. . : : : .:.: : : . .
NP_003 HHGAVTAAYHMTAAGVPQLSHSAVGGYCNGNLGNMSELPP-YQDT-MRNSASGPGWYGAN
60 70 80 90 100 110
120 130 140 150 160
pF1KE3 PE-----VVRDRSQKSCQLKKSLETAGDCKAAEESERPKPRS-RRKPRVLFSQAQVFELE
:. . : . : . ... :. . .. : : . ::: :::::::::.:::
NP_003 PDPRFPAISRFMGPASGMNMSGMGGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELE
120 130 140 150 160 170
170 180 190 200 210
pF1KE3 RRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKCKRQRQDKSLEL----------
::::::.:::::::::::: ..:: :::::::::.::: ::: .::. .
NP_003 RRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDKAAQQQLQQDSGGGG
180 190 200 210 220 230
220 230 240 250
pF1KE3 ---GAHAPPPP------PRRVAVPVLVRDGKPCVT----PSA---QAYGAPYSVGASAYS
:. : ::::::::::.::::: . :.: :... . . .
NP_003 GGGGTGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGAASLQGHAQQQAQHQAQAA
240 250 260 270 280 290
260 270 280 290
pF1KE3 YNSFPAYGYGNSAAG----PPRRPLPC--SPPAARPEAAPL
. : . :...:: : ..: :: :. :.:
NP_003 QAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAALQGQVSSLSHLNSSGSDY
300 310 320 330 340 350
NP_003 GTMSCSTLLYGRTW
360 370
293 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:33:25 2016 done: Sat Nov 5 22:33:27 2016
Total Scan time: 9.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]