FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3518, 691 aa
  1>>>pF1KE3518 691 - 691 aa - 691 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1227+/-0.00107; mu= 16.4802+/- 0.065
 mean_var=96.8943+/-19.422, 0's: 0 Z-trim(105.5): 51  B-trim: 0 in 0/50
 Lambda= 0.130294
 statistics sampled from 8453 (8486) to 8453 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.261), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS3415.1 FBXL5 gene_id:26234|Hs108|chr4          ( 691) 4691 892.8       0
CCDS54745.1 FBXL5 gene_id:26234|Hs108|chr4         ( 674) 4378 834.0       0


>>CCDS3415.1 FBXL5 gene_id:26234|Hs108|chr4               (691 aa)
 initn: 4691 init1: 4691 opt: 4691  Z-score: 4768.7  bits: 892.8 E(32554):    0
Smith-Waterman score: 4691; 99.7% identity (99.7% similar) in 691 aa overlap (1-691:1-691)

               10        20        30        40        50        60
pF1KE3 MAPFPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFTEFKMHEQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
CCDS34 MAPFPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ENEYIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ENEYIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNHAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNHAEER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QKFFKYSVDEKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QKFFKYSVDEKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 TRSLWKHLYPVHWARGDWYSGPATELDTEPDDEWVKNRKDESRAFHEWDEDADIDESEES
       : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGSLWKHLYPVHWARGDWYSGPATELDTEPDDEWVKNRKDESRAFHEWDEDADIDESEES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 AEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQILELCPNLEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQILELCPNLEH
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALGILTSHQSGFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALGILTSHQSGFLK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 TSTSKITSTAWKNKDITMQSTKQYACLHDLTNKGIGEEIDNEHPWTKPVSSENFTSPYVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSTSKITSTAWKNKDITMQSTKQYACLHDLTNKGIGEEIDNEHPWTKPVSSENFTSPYVW
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 MLDAEDLADIEDTVEWRHRNVESLCVMETASNFSCSTSGCFSKDIVGLRTSVCWQQHCAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MLDAEDLADIEDTVEWRHRNVESLCVMETASNFSCSTSGCFSKDIVGLRTSVCWQQHCAS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 PAFAYCGHSFCCTGTALRTMSSLPESSAMCRKAARTRLPRGKDLIYFGSEKSDQETGRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PAFAYCGHSFCCTGTALRTMSSLPESSAMCRKAARTRLPRGKDLIYFGSEKSDQETGRVL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 LFLSLSGCYQITDHGLRVLTLGGGLPYLEHLNLSGCLTITGAGLQDLVSACPSLNDEYFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 LFLSLSGCYQITDHGLRVLTLGGGLPYLEHLNLSGCLTITGAGLQDLVSACPSLNDEYFY
              610       620       630       640       650       660

              670       680       690 
pF1KE3 YCDNINGPHADTASGCQNLQCGFRACCRSGE
       :::::::::::::::::::::::::::::::
CCDS34 YCDNINGPHADTASGCQNLQCGFRACCRSGE
              670       680       690 

>>CCDS54745.1 FBXL5 gene_id:26234|Hs108|chr4              (674 aa)
 initn: 4378 init1: 4378 opt: 4378  Z-score: 4450.8  bits: 834.0 E(32554):    0
Smith-Waterman score: 4540; 97.3% identity (97.3% similar) in 691 aa overlap (1-691:1-674)

               10        20        30        40        50        60
pF1KE3 MAPFPEEVDVFTAPHWRMKQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFTEFKMHEQI
       ::::::::::::::::::::::::::::                 :::::: ::::::::
CCDS54 MAPFPEEVDVFTAPHWRMKQLVGLYCDK-----------------SLYATFKEFKMHEQI
               10        20                         30        40   

               70        80        90       100       110       120
pF1KE3 ENEYIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ENEYIIGLLQQRSQTIYNVHSDNKLSEMLSLFEKGLKNVKNEYEQLNYAKQLKERLEAFT
            50        60        70        80        90       100   

              130       140       150       160       170       180
pF1KE3 RDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNHAEER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RDFLPHMKEEEEVFQPMLMEYFTYEELKDIKKKVIAQHCSQKDTAELLRGLSLWNHAEER
           110       120       130       140       150       160   

              190       200       210       220       230       240
pF1KE3 QKFFKYSVDEKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QKFFKYSVDEKSDKEAEVSEHSTGITHLPPEVMLSIFSYLNPQELCRCSQVSMKWSQLTK
           170       180       190       200       210       220   

              250       260       270       280       290       300
pF1KE3 TRSLWKHLYPVHWARGDWYSGPATELDTEPDDEWVKNRKDESRAFHEWDEDADIDESEES
       : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TGSLWKHLYPVHWARGDWYSGPATELDTEPDDEWVKNRKDESRAFHEWDEDADIDESEES
           230       240       250       260       270       280   

              310       320       330       340       350       360
pF1KE3 AEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQILELCPNLEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AEESIAISIAQMEKRLLHGLIHNVLPYVGTSVKTLVLAYSSAVSSKMVRQILELCPNLEH
           290       300       310       320       330       340   

              370       380       390       400       410       420
pF1KE3 LDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALGILTSHQSGFLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LDLTQTDISDSAFDSWSWLGCCQSLRHLDLSGCEKITDVALEKISRALGILTSHQSGFLK
           350       360       370       380       390       400   

              430       440       450       460       470       480
pF1KE3 TSTSKITSTAWKNKDITMQSTKQYACLHDLTNKGIGEEIDNEHPWTKPVSSENFTSPYVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TSTSKITSTAWKNKDITMQSTKQYACLHDLTNKGIGEEIDNEHPWTKPVSSENFTSPYVW
           410       420       430       440       450       460   

              490       500       510       520       530       540
pF1KE3 MLDAEDLADIEDTVEWRHRNVESLCVMETASNFSCSTSGCFSKDIVGLRTSVCWQQHCAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MLDAEDLADIEDTVEWRHRNVESLCVMETASNFSCSTSGCFSKDIVGLRTSVCWQQHCAS
           470       480       490       500       510       520   

              550       560       570       580       590       600
pF1KE3 PAFAYCGHSFCCTGTALRTMSSLPESSAMCRKAARTRLPRGKDLIYFGSEKSDQETGRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PAFAYCGHSFCCTGTALRTMSSLPESSAMCRKAARTRLPRGKDLIYFGSEKSDQETGRVL
           530       540       550       560       570       580   

              610       620       630       640       650       660
pF1KE3 LFLSLSGCYQITDHGLRVLTLGGGLPYLEHLNLSGCLTITGAGLQDLVSACPSLNDEYFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LFLSLSGCYQITDHGLRVLTLGGGLPYLEHLNLSGCLTITGAGLQDLVSACPSLNDEYFY
           590       600       610       620       630       640   

              670       680       690 
pF1KE3 YCDNINGPHADTASGCQNLQCGFRACCRSGE
       :::::::::::::::::::::::::::::::
CCDS54 YCDNINGPHADTASGCQNLQCGFRACCRSGE
           650       660       670    




691 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 22:28:48 2016 done: Sun Nov  6 22:28:48 2016
 Total Scan time:  3.530 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]