FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3511, 397 aa
  1>>>pF1KE3511 397 - 397 aa - 397 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7267+/-0.000771; mu= 11.3000+/- 0.047
 mean_var=111.9602+/-22.420, 0's: 0 Z-trim(111.6): 11  B-trim: 9 in 1/51
 Lambda= 0.121211
 statistics sampled from 12537 (12545) to 12537 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.385), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS10102.1 ELL3 gene_id:80237|Hs108|chr15         ( 397) 2685 480.0 1.7e-135
CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5           ( 640)  437 87.0 5.3e-17
CCDS12380.1 ELL gene_id:8178|Hs108|chr19           ( 621)  394 79.5 9.5e-15


>>CCDS10102.1 ELL3 gene_id:80237|Hs108|chr15              (397 aa)
 initn: 2685 init1: 2685 opt: 2685  Z-score: 2546.3  bits: 480.0 E(32554): 1.7e-135
Smith-Waterman score: 2685; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)

               10        20        30        40        50        60
pF1KE3 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEELQEPLRGQLRLCFTQAARTSLLLLRLNDAALRALQECQRQQVRPVIAFQGHRGYLRL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PGPGWSCLFSFIVSQCCQEGAGGSLDLVCQRFLRSGPNSLHCLGSLRERLIIWAAMDSIP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 APSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQGQSLPGSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 REHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVPVATVELEEKRFRTLPLVPSP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPSPEDIPDYLLQYRAIHSAEQQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 HAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLEDKIIQEYKKFR
              310       320       330       340       350       360

              370       380       390       
pF1KE3 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
       :::::::::::::::::::::::::::::::::::::
CCDS10 KQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS
              370       380       390       

>>CCDS4080.1 ELL2 gene_id:22936|Hs108|chr5                (640 aa)
 initn: 599 init1: 404 opt: 437  Z-score: 418.7  bits: 87.0 E(32554): 5.3e-17
Smith-Waterman score: 437; 33.6% identity (66.0% similar) in 253 aa overlap (152-393:385-634)

             130       140       150       160       170        180
pF1KE3 PSSVQGHNLTEDARHPESWQNTGGYSEGDAVSQPQMALEEVSVSDPLASNQG-QSLPGSS
                                     .:.: . ..  : :     ..: :.:: .:
CCDS40 TSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISHPPQIVNSNSNSPSTPEGRGTQDLPVDS
          360       370       380       390       400       410    

              190       200           210       220       230      
pF1KE3 REHMAQWEVRSQTHVPNREPVQALPSSA----SRKRLDKKRSVPVATVELEEKRFRTLPL
         .  .    .: .  .:  ...:: ..      : .....:.     . . :. .    
CCDS40 FSQNDSIYEDQQDKYTSRTSLETLPPGSVLLKCPKPMEENHSMSHKKSKKKSKKHKEKDQ
          420       430       440       450       460       470    

        240       250       260         270           280       290
pF1KE3 VPSPLQGLTNQDLQEGEDWEQEDE--DMDPRLEHSSS-VQED---SESPSPEDIPDYLLQ
       . .  . . . . .: :: ..:.:   ..    .::. :.::   :  ::  ..::::..
CCDS40 IKK--HDIETIEEKE-EDLKREEEIAKLNNSSPNSSGGVKEDCTASMEPSAIELPDYLIK
            480        490       500       510       520       530 

              300       310       320       330       340       350
pF1KE3 YRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGTPEYKVLED
       : :: : ::.. :..::...: ::: ::::. :...:::.: :. ::.  :. ::. ...
CCDS40 YIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVHE
             540       550       560       570       580       590 

              360       370       380       390         
pF1KE3 KIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS  
       ...:::.:.... :.:.::: ::::::.::.::: :: ::...      
CCDS40 EVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQQQAESWS
             600       610       620       630       640

>>CCDS12380.1 ELL gene_id:8178|Hs108|chr19                (621 aa)
 initn: 541 init1: 383 opt: 394  Z-score: 378.2  bits: 79.5 E(32554): 9.5e-15
Smith-Waterman score: 403; 36.5% identity (64.5% similar) in 203 aa overlap (191-393:434-615)

              170       180       190       200       210       220
pF1KE3 EVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNREPVQALPSSASRKRLDKKRSVP
                                     .:   :.  : .. :.. :.:. ::.:.. 
CCDS12 LGHSGRDCEHGEAAAPAPTVRLGLPLLTDCAQPSRPHGSPSRSKPKKKSKKHKDKERAA-
           410       420       430       440       450       460   

              230       240       250       260       270       280
pF1KE3 VATVELEEKRFRTLPLVPSPLQGLTNQDLQEGEDWEQEDEDMDPRLEHSSSVQEDSESPS
             :.:    ::   .:    :      :   .       : :. . ::  .:   :
CCDS12 ------EDKPRAQLPDC-APATHAT-----PGAPADT------PGLNGTCSV--SSVPTS
                  470        480                  490         500  

              290       300       310       320       330       340
pF1KE3 PEDIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRR
         . :::::.: :: :.::...:..::...:.::: ::::.   ..:: .: :..... .
CCDS12 TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQLRQLSQ
            510       520       530       540       550       560  

              350       360       370       380       390         
pF1KE3 GTPEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEEKNRGS  
       :. ::.. . .:.:::.:..:   .: .::.::::::.::.::: :: :....      
CCDS12 GSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQRQLQAWP
            570       580       590       600       610       620 




397 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 10:22:25 2016 done: Tue Nov  8 10:22:25 2016
 Total Scan time:  2.350 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]