Result of FASTA (omim) for
pFN21AE3509
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3509, 580 aa
1>>>pF1KE3509 580 - 580 aa - 580 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1196+/-0.000346; mu= 20.6120+/- 0.022
mean_var=81.1302+/-16.530, 0's: 0 Z-trim(115.3): 121 B-trim: 690 in 1/58
Lambda= 0.142391
statistics sampled from 25579 (25712) to 25579 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.671), E-opt: 0.2 (0.301), width: 16
Scan time: 10.890
The best scores are: opt bits E(85289)
NP_277041 (OMIM: 609097) F-box only protein 24 iso ( 580) 4008 833.3 0
XP_011514324 (OMIM: 609097) PREDICTED: F-box only ( 585) 3937 818.8 0
NP_036304 (OMIM: 609097) F-box only protein 24 iso ( 618) 3930 817.3 0
XP_016867450 (OMIM: 609097) PREDICTED: F-box only ( 603) 3924 816.1 0
NP_001156971 (OMIM: 609097) F-box only protein 24 ( 568) 3923 815.9 0
XP_011514325 (OMIM: 609097) PREDICTED: F-box only ( 412) 2848 594.9 1.7e-169
XP_005250316 (OMIM: 609097) PREDICTED: F-box only ( 561) 2665 557.4 4.3e-158
XP_016875865 (OMIM: 603524) PREDICTED: RCC1 and BT ( 324) 189 48.6 3.8e-05
NP_061185 (OMIM: 609587) protein RCC2 [Homo sapien ( 522) 187 48.4 7.1e-05
NP_001129676 (OMIM: 609587) protein RCC2 [Homo sap ( 522) 187 48.4 7.1e-05
XP_016875864 (OMIM: 603524) PREDICTED: RCC1 and BT ( 340) 183 47.4 9.2e-05
XP_016875863 (OMIM: 603524) PREDICTED: RCC1 and BT ( 340) 183 47.4 9.2e-05
XP_005266301 (OMIM: 603524) PREDICTED: RCC1 and BT ( 527) 183 47.6 0.00013
NP_001273760 (OMIM: 603524) RCC1 and BTB domain-co ( 527) 183 47.6 0.00013
XP_006719822 (OMIM: 603524) PREDICTED: RCC1 and BT ( 551) 183 47.6 0.00013
NP_001259 (OMIM: 603524) RCC1 and BTB domain-conta ( 551) 183 47.6 0.00013
XP_005266299 (OMIM: 603524) PREDICTED: RCC1 and BT ( 551) 183 47.6 0.00013
XP_016875862 (OMIM: 603524) PREDICTED: RCC1 and BT ( 555) 183 47.6 0.00013
NP_001273759 (OMIM: 603524) RCC1 and BTB domain-co ( 556) 183 47.6 0.00013
XP_016875860 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 183 47.6 0.00013
XP_016875861 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 183 47.6 0.00013
XP_011533196 (OMIM: 603524) PREDICTED: RCC1 and BT ( 556) 183 47.6 0.00013
XP_016875858 (OMIM: 603524) PREDICTED: RCC1 and BT ( 561) 183 47.6 0.00013
XP_016875859 (OMIM: 603524) PREDICTED: RCC1 and BT ( 561) 183 47.6 0.00013
XP_016878195 (OMIM: 605109,617011) PREDICTED: prob (2792) 189 49.4 0.00018
XP_011533438 (OMIM: 103780,607867) PREDICTED: RCC1 ( 288) 177 46.1 0.00019
NP_003913 (OMIM: 605109,617011) probable E3 ubiqui (4861) 189 49.7 0.00027
XP_016878194 (OMIM: 605109,617011) PREDICTED: prob (4883) 189 49.7 0.00027
XP_016878193 (OMIM: 605109,617011) PREDICTED: prob (4885) 189 49.7 0.00027
XP_016878192 (OMIM: 605109,617011) PREDICTED: prob (4891) 189 49.7 0.00027
XP_016878191 (OMIM: 605109,617011) PREDICTED: prob (4892) 189 49.7 0.00027
XP_016878190 (OMIM: 605109,617011) PREDICTED: prob (4892) 189 49.7 0.00027
XP_016878189 (OMIM: 605109,617011) PREDICTED: prob (4897) 189 49.7 0.00027
XP_016878188 (OMIM: 605109,617011) PREDICTED: prob (4909) 189 49.7 0.00027
XP_005266498 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 177 46.3 0.0003
NP_060661 (OMIM: 103780,607867) RCC1 and BTB domai ( 531) 177 46.3 0.0003
XP_011533436 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 177 46.3 0.0003
XP_011533435 (OMIM: 103780,607867) PREDICTED: RCC1 ( 531) 177 46.3 0.0003
XP_011533437 (OMIM: 103780,607867) PREDICTED: RCC1 ( 402) 153 41.3 0.0074
>>NP_277041 (OMIM: 609097) F-box only protein 24 isoform (580 aa)
initn: 4008 init1: 4008 opt: 4008 Z-score: 4450.1 bits: 833.3 E(85289): 0
Smith-Waterman score: 4008; 100.0% identity (100.0% similar) in 580 aa overlap (1-580:1-580)
10 20 30 40 50 60
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_277 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
490 500 510 520 530 540
550 560 570 580
pF1KE3 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::
NP_277 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
550 560 570 580
>>XP_011514324 (OMIM: 609097) PREDICTED: F-box only prot (585 aa)
initn: 3930 init1: 3930 opt: 3937 Z-score: 4371.2 bits: 818.8 E(85289): 0
Smith-Waterman score: 3937; 98.8% identity (99.3% similar) in 578 aa overlap (3-580:10-585)
10 20 30 40 50
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISF
:.. :: . :::::::::::::::::::::::::::::::::::::::::
XP_011 MNAEPLAGRERSSPL--QWRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISF
10 20 30 40 50
60 70 80 90 100 110
pF1KE3 LPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE3 FQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE3 ACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 RVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRK
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE3 VSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLAL
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE3 SLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLW
360 370 380 390 400 410
420 430 440 450 460 470
pF1KE3 CGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATREC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATREC
420 430 440 450 460 470
480 490 500 510 520 530
pF1KE3 LYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQ
480 490 500 510 520 530
540 550 560 570 580
pF1KE3 DRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
:::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
540 550 560 570 580
>>NP_036304 (OMIM: 609097) F-box only protein 24 isoform (618 aa)
initn: 3930 init1: 3930 opt: 3930 Z-score: 4363.1 bits: 817.3 E(85289): 0
Smith-Waterman score: 3930; 100.0% identity (100.0% similar) in 568 aa overlap (13-580:51-618)
10 20 30 40
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF
::::::::::::::::::::::::::::::
NP_036 SREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCGSELGVEEKRGKGNPISIQLF
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
210 220 230 240 250 260
230 240 250 260 270 280
pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
270 280 290 300 310 320
290 300 310 320 330 340
pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
330 340 350 360 370 380
350 360 370 380 390 400
pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
390 400 410 420 430 440
410 420 430 440 450 460
pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
450 460 470 480 490 500
470 480 490 500 510 520
pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
510 520 530 540 550 560
530 540 550 560 570 580
pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
570 580 590 600 610
>>XP_016867450 (OMIM: 609097) PREDICTED: F-box only prot (603 aa)
initn: 3924 init1: 3924 opt: 3924 Z-score: 4356.6 bits: 816.1 E(85289): 0
Smith-Waterman score: 3924; 99.8% identity (100.0% similar) in 568 aa overlap (13-580:36-603)
10 20 30 40
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF
.:::::::::::::::::::::::::::::
XP_016 CRAGEISGEVSTGSPQKREEDVCQCRPECSQVKRSCPSCGSELGVEEKRGKGNPISIQLF
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
250 260 270 280 290 300
290 300 310 320 330 340
pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
310 320 330 340 350 360
350 360 370 380 390 400
pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
370 380 390 400 410 420
410 420 430 440 450 460
pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
430 440 450 460 470 480
470 480 490 500 510 520
pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
490 500 510 520 530 540
530 540 550 560 570 580
pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
550 560 570 580 590 600
>>NP_001156971 (OMIM: 609097) F-box only protein 24 isof (568 aa)
initn: 3923 init1: 3923 opt: 3923 Z-score: 4355.8 bits: 815.9 E(85289): 0
Smith-Waterman score: 3923; 100.0% identity (100.0% similar) in 567 aa overlap (14-580:2-568)
10 20 30 40 50 60
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVKRSCPSCGSELGVEEKRGKGNPISIQLFPPELVEHIISFLPVRDLV
10 20 30 40
70 80 90 100 110 120
pF1KE3 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKRAAILNYTKGLYFQAFGGR
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPH
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE3 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKIL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE3 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSL
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE3 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSH
410 420 430 440 450 460
490 500 510 520 530 540
pF1KE3 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMK
470 480 490 500 510 520
550 560 570 580
pF1KE3 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::
NP_001 EIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
530 540 550 560
>>XP_011514325 (OMIM: 609097) PREDICTED: F-box only prot (412 aa)
initn: 2848 init1: 2848 opt: 2848 Z-score: 3164.1 bits: 594.9 E(85289): 1.7e-169
Smith-Waterman score: 2848; 100.0% identity (100.0% similar) in 412 aa overlap (169-580:1-412)
140 150 160 170 180 190
pF1KE3 FLPTKDHVFILDYVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYR
::::::::::::::::::::::::::::::
XP_011 MQWKRACRYVVLCRGAKDFASDPRCDTVYR
10 20 30
200 210 220 230 240 250
pF1KE3 KYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KYLYVLATREPQEVVGTTSSRACDCVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQR
40 50 60 70 80 90
260 270 280 290 300 310
pF1KE3 ALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTD
100 110 120 130 140 150
320 330 340 350 360 370
pF1KE3 QGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QGGVYFEVHTPGVYRDLFGTLQAFDPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRI
160 170 180 190 200 210
380 390 400 410 420 430
pF1KE3 FMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCG
220 230 240 250 260 270
440 450 460 470 480 490
pF1KE3 AGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVG
280 290 300 310 320 330
500 510 520 530 540 550
pF1KE3 TPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWE
340 350 360 370 380 390
560 570 580
pF1KE3 ALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::
XP_011 ALDMLQRAEGGGGGVGPPAPET
400 410
>>XP_005250316 (OMIM: 609097) PREDICTED: F-box only prot (561 aa)
initn: 2665 init1: 2665 opt: 2665 Z-score: 2959.2 bits: 557.4 E(85289): 4.3e-158
Smith-Waterman score: 3398; 90.0% identity (90.0% similar) in 568 aa overlap (13-580:51-561)
10 20 30 40
pF1KE3 MGEKAVPLLRRRRVKRSCPSCGSELGVEEKRGKGNPISIQLF
::::::::::::::::::::::::::::::
XP_005 SREGAIRMVRGSQRRKLQKFTRLCGREEGLRVKRSCPSCGSELGVEEKRGKGNPISIQLF
30 40 50 60 70 80
50 60 70 80 90 100
pF1KE3 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PPELVEHIISFLPVRDLVALGQTCRYFHEVCDGEGVWRRICRRLSPRLQDQGSGVRPWKR
90 100 110 120 130 140
110 120 130 140 150 160
pF1KE3 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AAILNYTKGLYFQAFGGRRRCLSKSVAPLLAHGYRRFLPTKDHVFILDYVGTLFFLKNAL
150 160 170 180 190 200
170 180 190 200 210 220
pF1KE3 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VSTLGQMQWKRACRYVVLCRGAKDFASDPRCDTVYRKYLYVLATREPQEVVGTTSSRACD
210 220 230 240 250 260
230 240 250 260 270 280
pF1KE3 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CVEVYLQSSGQRVFKMTFHHSMTFKQIVLVGQETQRALLLLTEEGKIYSLVVNETQLDQP
270 280 290 300 310 320
290 300 310 320 330 340
pF1KE3 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGGVYFEVHTPGVYRDLFGTLQAF
330 340 350 360 370 380
350 360 370 380 390 400
pF1KE3 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DPLDQQMPLALSLPAKILFCALGYNHLGLVDEFGRIFMQGNNRYGQLGTGDKMDRGEPTQ
390 400 410 420 430 440
410 420 430 440 450 460
pF1KE3 VCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPL
: ::
XP_005 V---------------------------------------------------------PL
470 480 490 500 510 520
pF1KE3 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CACALCATRECLYILSSHDIEQHAPYRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEY
450 460 470 480 490 500
530 540 550 560 570 580
pF1KE3 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LSQIHSCQTLQDRTEKMKEIVGWMPLMAAQKDFFWEALDMLQRAEGGGGGVGPPAPET
510 520 530 540 550 560
>>XP_016875865 (OMIM: 603524) PREDICTED: RCC1 and BTB do (324 aa)
initn: 171 init1: 123 opt: 189 Z-score: 213.4 bits: 48.6 E(85289): 3.8e-05
Smith-Waterman score: 189; 27.3% identity (52.2% similar) in 249 aa overlap (181-417:87-324)
160 170 180 190 200
pF1KE3 YVGTLFFLKNALVSTLGQMQWKRACRYVVLCRGAKDFAS--DPR-CDTVYRKYLYVLATR
: : : : .:: :.. : . :.
XP_016 QACVFGSAGNEVLYTTVNDEIFVLGTNCCGCLGLGDVQSTIEPRRLDSLNGKKIACLSYG
60 70 80 90 100 110
210 220 230 240 250 260
pF1KE3 E-PQEVVGTTSSRACD-CVEVYLQ-SSGQRVFKMTFHH---SMTFKQIVLVGQETQRALL
:. :..:: ... ..: : ..: .. : ... ::.. :. . ..:.
XP_016 SGPHIVLATTEGEVFTWGHNAYSQLGNGTTNHGLVPCHISTNLSNKQVIEVACGSYHSLV
120 130 140 150 160 170
270 280 290 300 310 320
pF1KE3 LLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYLPHLRVACMTSNQSSTLYVTDQGG
: : .:.... :.. : . : :.:. : . :. .. .: . :.: :
XP_016 L-TSDGEVFAWGYNNSGQVGSGSTVNQPIPRRVTGCLQNKVVVTIACGQMCCMAVVDTG-
180 190 200 210 220 230
330 340 350 360 370
pF1KE3 VYFEVHTPGVYRDLFGTLQAFDPLDQQMP--LALSLPAKILFCALGYNH-LGLVDEFGRI
::.. : . : : . .: : .: .. : :: : : :.:: :..
XP_016 ---EVYVWGYNGN--GQLGLGNSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDE-GQV
240 250 260 270 280
380 390 400 410 420 430
pF1KE3 FMQGNNRYGQLGTGDKMDRGEPTQVCYLQRPITLWCGLNHSLVLSQSSEFSKELLGCGCG
. : : :::::::.: ... :: : . . :: :
XP_016 YAWGANSYGQLGTGNKSNQSYPTPVTVEKDRV---CGQN
290 300 310 320
440 450 460 470 480 490
pF1KE3 AGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAPYRHLPASRVVG
>>NP_061185 (OMIM: 609587) protein RCC2 [Homo sapiens] (522 aa)
initn: 178 init1: 104 opt: 187 Z-score: 208.5 bits: 48.4 E(85289): 7.1e-05
Smith-Waterman score: 187; 26.5% identity (51.0% similar) in 204 aa overlap (288-481:126-321)
260 270 280 290 300 310
pF1KE3 RALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYL--PHLRVACMTSNQSSTLY
: : :.... : :: : .:... . :.
NP_061 KLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPH-RYGCLAGVRVRTVV
100 110 120 130 140 150
320 330 340 350 360
pF1KE3 VTDQGGVYFEVHTPGVY----RDLFGTLQAFDPLDQQMP-LALSLPAKILFCAL-GYNHL
. .. . . : : :. : : : . : : .: ... : : ::
NP_061 SGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE3 GLVDEFGRIFMQGNNRYGQLGTGDKMDR-GEPTQVCYLQRPIT-LWCGLNHSLVLSQSSE
. : : .: :.:..:::: :.. : :.:. : .::: . :: . :... .
NP_061 LALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIM----D
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE3 FSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAP
. .: . :: :.: :. :. .. : : : ..: ...:
NP_061 CKGNLYSFGCPEYGQLGHNSDGK--FIARAQRIEY-DCELVPRRVAIFIEKTKDGQILPV
280 290 300 310 320
490 500 510 520 530 540
pF1KE3 YRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMP
NP_061 PNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGAS
330 340 350 360 370 380
>>NP_001129676 (OMIM: 609587) protein RCC2 [Homo sapiens (522 aa)
initn: 178 init1: 104 opt: 187 Z-score: 208.5 bits: 48.4 E(85289): 7.1e-05
Smith-Waterman score: 187; 26.5% identity (51.0% similar) in 204 aa overlap (288-481:126-321)
260 270 280 290 300 310
pF1KE3 RALLLLTEEGKIYSLVVNETQLDQPRSYTVQLALRKVSHYL--PHLRVACMTSNQSSTLY
: : :.... : :: : .:... . :.
NP_001 KLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPH-RYGCLAGVRVRTVV
100 110 120 130 140 150
320 330 340 350 360
pF1KE3 VTDQGGVYFEVHTPGVY----RDLFGTLQAFDPLDQQMP-LALSLPAKILFCAL-GYNHL
. .. . . : : :. : : : . : : .: ... : : ::
NP_001 SGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEGLSHEVIVSAACGRNHT
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE3 GLVDEFGRIFMQGNNRYGQLGTGDKMDR-GEPTQVCYLQRPIT-LWCGLNHSLVLSQSSE
. : : .: :.:..:::: :.. : :.:. : .::: . :: . :... .
NP_001 LALTETGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMIM----D
220 230 240 250 260 270
430 440 450 460 470 480
pF1KE3 FSKELLGCGCGAGGRLPGWPKGSASFVKLQVKVPLCACALCATRECLYILSSHDIEQHAP
. .: . :: :.: :. :. .. : : : ..: ...:
NP_001 CKGNLYSFGCPEYGQLGHNSDGK--FIARAQRIEY-DCELVPRRVAIFIEKTKDGQILPV
280 290 300 310 320
490 500 510 520 530 540
pF1KE3 YRHLPASRVVGTPEPSLGARAPQDPGGMAQACEEYLSQIHSCQTLQDRTEKMKEIVGWMP
NP_001 PNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGAS
330 340 350 360 370 380
580 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:13:24 2016 done: Sat Nov 5 02:13:26 2016
Total Scan time: 10.890 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]