FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3501, 1222 aa
  1>>>pF1KE3501 1222 - 1222 aa - 1222 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5779+/-0.000425; mu= 4.5395+/- 0.027
 mean_var=283.7074+/-59.453, 0's: 0 Z-trim(120.9): 2  B-trim: 1360 in 2/59
 Lambda= 0.076145
 statistics sampled from 36852 (36855) to 36852 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.432), width:  16
 Scan time: 18.490

The best scores are:                                      opt bits E(85289)
NP_079330 (OMIM: 611745) deubiquitinating protein  (1222) 8208 916.3       0


>>NP_079330 (OMIM: 611745) deubiquitinating protein VCIP  (1222 aa)
 initn: 8208 init1: 8208 opt: 8208  Z-score: 4886.5  bits: 916.3 E(85289):    0
Smith-Waterman score: 8208; 99.8% identity (99.9% similar) in 1222 aa overlap (1-1222:1-1222)

               10        20        30        40        50        60
pF1KE3 MSQPPPPPPPLPPPPPPPEAPQTPSSLASAAASGGLLKRRDRRILSGSCPDPKCQARLFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MSQPPPPPPPLPPPPPPPEAPQTPSSLASAAASGGLLKRRDRRILSGSCPDPKCQARLFF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 PASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLGVTGAPKKNTELVKVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLGVTGAPKKNTELVKVM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCALLGDRAFPIEPEHVNTVGY
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_079 GLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCALLGDRAFLIEPEHVNTVGY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 RPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGKDGHLNKPICIAWSSSGRNHYIPLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 RPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGKDGHLNKPICIAWSSSGRNHYIPLVG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 IKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 IKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 FMDKHGIHPSLVADVHRYFYRRTGVIGVQPEEVTAAAKKAVMDNRLHKCLLCGALSELHV
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_079 FMDKHGIHPSLVADVHQYFYRRTGVIGVQPEEVTAAAKKAVMDNRLHKCLLCGALSELHV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 PPEWLAPGGKLYNLAKSTHGQLRTDKNYSFPLNNLVCSYDSVKDVLVPDYGMSNLTACNW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PPEWLAPGGKLYNLAKSTHGQLRTDKNYSFPLNNLVCSYDSVKDVLVPDYGMSNLTACNW
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 CHGTSVRKVRGDGSIVYLDGDRTNSRSTGGKCGCGFKHFWDGKEYDNLPEAFPITLEWGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 CHGTSVRKVRGDGSIVYLDGDRTNSRSTGGKCGCGFKHFWDGKEYDNLPEAFPITLEWGG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 RVVRETVYWFQYESDSSLNSNVYDVAMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 RVVRETVYWFQYESDSSLNSNVYDVAMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 DDYTPVNIDGAHAQRVGDVQGQESESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 DDYTPVNIDGAHAQRVGDVQGQESESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNI
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 TEQASVMQKRKTEKLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSPTTSKEKKIRIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TEQASVMQKRKTEKLKQEQKGQPRTVSPSTIRDGPSSAPATPTKAPYSPTTSKEKKIRIT
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE3 TNDGRQSMVTLKSSTTFFELQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TNDGRQSMVTLKSSTTFFELQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPL
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE3 QHGDRITIEILKSKAEGGQSAAAHSAHTVKQEDIAVTGKLSSKELQEQAEKEMYSLCLLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QHGDRITIEILKSKAEGGQSAAAHSAHTVKQEDIAVTGKLSSKELQEQAEKEMYSLCLLA
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE3 TLMGEDVWSYAKGLPHMFQQGGVFYSIMKKTMGMADGKHCTFPHLPGKTFVYNASEDRLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TLMGEDVWSYAKGLPHMFQQGGVFYSIMKKTMGMADGKHCTFPHLPGKTFVYNASEDRLE
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE3 LCVDAAGHFPIGPDVEDLVKEAVSQVRAEATTRSRESSPSHGLLKLGSGGVVKKKSEQLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LCVDAAGHFPIGPDVEDLVKEAVSQVRAEATTRSRESSPSHGLLKLGSGGVVKKKSEQLH
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE3 NVTAFQGKGHSLGTASGNPHLDPRARETSVVRKHNTGTDFSNSSTKTEPSVFTASSSNSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NVTAFQGKGHSLGTASGNPHLDPRARETSVVRKHNTGTDFSNSSTKTEPSVFTASSSNSE
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE3 LIRIAPGVVTMRDGRQLDPDLVEAQRKKLQEMVSSIQASMDRHLRDQSTEQSPSDLPQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LIRIAPGVVTMRDGRQLDPDLVEAQRKKLQEMVSSIQASMDRHLRDQSTEQSPSDLPQRK
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE3 TEVVSSSAKSGSLQTGLPESFPLTGGTENLNTETTDGCVADALGAAFATRSKAQRGNSVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 TEVVSSSAKSGSLQTGLPESFPLTGGTENLNTETTDGCVADALGAAFATRSKAQRGNSVE
             1150      1160      1170      1180      1190      1200

             1210      1220  
pF1KE3 ELEEMDSQDAEMTNTTEPMDHS
       ::::::::::::::::::::::
NP_079 ELEEMDSQDAEMTNTTEPMDHS
             1210      1220  




1222 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:15:50 2016 done: Sun Nov  6 06:15:53 2016
 Total Scan time: 18.490 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]