Result of FASTA (ccds) for
pFN21AE3435
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3435, 927 aa
1>>>pF1KE3435 927 - 927 aa - 927 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.9832+/-0.00142; mu= -16.1248+/- 0.087
mean_var=589.8620+/-119.267, 0's: 0 Z-trim(113.5): 22 B-trim: 47 in 1/52
Lambda= 0.052808
statistics sampled from 14130 (14137) to 14130 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.434), width: 16
Scan time: 3.010
The best scores are: opt bits E(32554)
CCDS54357.1 FBXO11 gene_id:80204|Hs108|chr2 ( 927) 6508 511.5 2.9e-144
CCDS1837.1 FBXO11 gene_id:80204|Hs108|chr2 ( 843) 5852 461.5 3e-129
>>CCDS54357.1 FBXO11 gene_id:80204|Hs108|chr2 (927 aa)
initn: 6508 init1: 6508 opt: 6508 Z-score: 2703.4 bits: 511.5 E(32554): 2.9e-144
Smith-Waterman score: 6508; 100.0% identity (100.0% similar) in 927 aa overlap (1-927:1-927)
10 20 30 40 50 60
pF1KE3 MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MNSVRAANRRPRRVSRPRPVQQQQQQPPQQPPPQPPQQQPPQQQPPPPPQQQQQQQPPPP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 PPPPPPLPQERNNVGERDDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PPPPPPLPQERNNVGERDDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACPTKNSME
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 GASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQDLCRAA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 CVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKESFQQLY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 KGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGIYTDEWI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 YIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 GIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 GFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 NSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 EKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 HMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 TLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIFDGFAAG
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 IEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKIS
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE3 SYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGTLSNPCT
850 860 870 880 890 900
910 920
pF1KE3 LAGEPTHDTDTLYDSAPPIESNTLQHN
:::::::::::::::::::::::::::
CCDS54 LAGEPTHDTDTLYDSAPPIESNTLQHN
910 920
>>CCDS1837.1 FBXO11 gene_id:80204|Hs108|chr2 (843 aa)
initn: 5852 init1: 5852 opt: 5852 Z-score: 2433.9 bits: 461.5 E(32554): 3e-129
Smith-Waterman score: 5852; 100.0% identity (100.0% similar) in 843 aa overlap (85-927:1-843)
60 70 80 90 100 110
pF1KE3 QQPPPPPPPPPPLPQERNNVGERDDDVPADMVAEESGPGAQNSPYQLRRKTLLPKRTACP
::::::::::::::::::::::::::::::
CCDS18 MVAEESGPGAQNSPYQLRRKTLLPKRTACP
10 20 30
120 130 140 150 160 170
pF1KE3 TKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 TKNSMEGASTSTTENFGHRAKRARVSGKSQDLSAAPAEQYLQEKLPDEVVLKIFSYLLEQ
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DLCRAACVCKRFSELANDPILWKRLYMEVFEYTRPMMHPEPGKFYQINPEEYEHPNPWKE
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 SFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 SFQQLYKGAHVKPGFAEHFYSNPARYKGRENMLYYDTIEDALGGVQEAHFDGLIFVHSGI
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE3 YTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 YTDEWIYIESPITMIGAAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKS
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE3 AQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 AQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLY
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE3 ITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 ITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNI
340 350 360 370 380 390
480 490 500 510 520 530
pF1KE3 HRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 HRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNS
400 410 420 430 440 450
540 550 560 570 580 590
pF1KE3 DPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQH
460 470 480 490 500 510
600 610 620 630 640 650
pF1KE3 GGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLE
520 530 540 550 560 570
660 670 680 690 700 710
pF1KE3 DNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWI
580 590 600 610 620 630
720 730 740 750 760 770
pF1KE3 KTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 KTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPILRKNRIF
640 650 660 670 680 690
780 790 800 810 820 830
pF1KE3 DGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQ
700 710 720 730 740 750
840 850 860 870 880 890
pF1KE3 CLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 CLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHDRFFCDCGAGT
760 770 780 790 800 810
900 910 920
pF1KE3 LSNPCTLAGEPTHDTDTLYDSAPPIESNTLQHN
:::::::::::::::::::::::::::::::::
CCDS18 LSNPCTLAGEPTHDTDTLYDSAPPIESNTLQHN
820 830 840
927 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:07:09 2016 done: Sun Nov 6 05:07:09 2016
Total Scan time: 3.010 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]