FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3425, 542 aa
  1>>>pF1KE3425 542 - 542 aa - 542 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3894+/-0.000892; mu= -1.3602+/- 0.054
 mean_var=359.0761+/-73.633, 0's: 0 Z-trim(116.9): 44  B-trim: 0 in 0/54
 Lambda= 0.067683
 statistics sampled from 17515 (17554) to 17515 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.539), width:  16
 Scan time:  4.490

The best scores are:                                      opt bits E(32554)
CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1        ( 542) 3659 370.9 2.1e-102


>>CCDS44141.1 DMRTA2 gene_id:63950|Hs108|chr1             (542 aa)
 initn: 3659 init1: 3659 opt: 3659  Z-score: 1952.0  bits: 370.9 E(32554): 2.1e-102
Smith-Waterman score: 3659; 100.0% identity (100.0% similar) in 542 aa overlap (1-542:1-542)

               10        20        30        40        50        60
pF1KE3 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MELRSELPSVPGAATAAAATATGPPVASVASVAAAAAAAASLPVSVAGGLLRGPPLLLRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AEKYPRTPKCARCRNHGVVSALKGHKRYCRWKDCLCAKCTLIAERQRVMAAQVALRRQQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QEENEARELQLLYGTAEGLALAAANGIIPPRPAYEVFGSVCAADGGGPGAGAPAGTGGGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AGAGGSEAKLQKFDLFPKTLLQAGRPGSPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NGDGESFSGSPLARASKEAGGSCPGSAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PAPGLGGGSGPRQRTPLDILTRVFPGHRRGVLELVLQGCGGDVVQAIEQVLNHHRGGLAA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GLGPAAPPDKAAVGAAAAADDAWPSRVDAAAAAAAAAGGPGLPAPLQAGPAAPPHHRPLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AGAMAPGALGSLSSRSAFSPLQPNASHFGADAGAYPLGAPLGLSPLRLAYSAAAAHSRGL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AFMAPYSTAGLVPTLGFRPPMDYAFSDLMRDRSAAAAAAVHKEPTYGGGLYGPMVNGAPE
              490       500       510       520       530       540

         
pF1KE3 KQ
       ::
CCDS44 KQ
         




542 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:33:11 2016 done: Tue Nov  8 04:33:11 2016
 Total Scan time:  4.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]