Result of FASTA (omim) for
pFN21AE3414
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3414, 353 aa
1>>>pF1KE3414 353 - 353 aa - 353 aa
Library: /omim/omim.rfq.tfa
63334102 residues in 89105 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9265+/-0.000527; mu= 7.8556+/- 0.033
mean_var=514.4885+/-111.368, 0's: 0 Z-trim(119.1): 202 B-trim: 2007 in 1/54
Lambda= 0.056544
statistics sampled from 33345 (33581) to 33345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.377), width: 16
Scan time: 8.980
The best scores are: opt bits E(89105)
NP_112533 (OMIM: 600124,615422) heterogeneous nucl ( 353) 2488 217.7 3.3e-56
XP_005249786 (OMIM: 600124,615422) PREDICTED: hete ( 353) 2488 217.7 3.3e-56
XP_016867598 (OMIM: 600124,615422) PREDICTED: hete ( 341) 2404 210.8 3.7e-54
XP_016867599 (OMIM: 600124,615422) PREDICTED: hete ( 341) 2404 210.8 3.7e-54
NP_002128 (OMIM: 600124,615422) heterogeneous nucl ( 341) 2404 210.8 3.7e-54
NP_001317177 (OMIM: 605372) heterogeneous nuclear ( 356) 1450 133.0 1e-30
NP_001317176 (OMIM: 605372) heterogeneous nuclear ( 356) 1450 133.0 1e-30
NP_001317178 (OMIM: 605372) heterogeneous nuclear ( 378) 1450 133.1 1e-30
NP_919223 (OMIM: 605372) heterogeneous nuclear rib ( 378) 1450 133.1 1e-30
NP_112420 (OMIM: 164017,615424,615426) heterogeneo ( 372) 1439 132.2 1.9e-30
XP_005268883 (OMIM: 164017,615424,615426) PREDICTE ( 372) 1439 132.2 1.9e-30
NP_002127 (OMIM: 164017,615424,615426) heterogeneo ( 320) 1276 118.7 1.8e-26
NP_001317179 (OMIM: 605372) heterogeneous nuclear ( 331) 1245 116.2 1.1e-25
NP_001317180 (OMIM: 605372) heterogeneous nuclear ( 331) 1245 116.2 1.1e-25
XP_016874740 (OMIM: 164017,615424,615426) PREDICTE ( 295) 1239 115.7 1.4e-25
NP_006796 (OMIM: 609409) heterogeneous nuclear rib ( 305) 939 91.2 3.3e-18
NP_112556 (OMIM: 602688) heterogeneous nuclear rib ( 332) 685 70.6 6e-12
NP_112737 (OMIM: 601324) heterogeneous nuclear rib ( 336) 679 70.1 8.4e-12
NP_112738 (OMIM: 601324) heterogeneous nuclear rib ( 355) 675 69.8 1.1e-11
NP_112740 (OMIM: 607137,609115) heterogeneous nucl ( 420) 669 69.4 1.6e-11
NP_004490 (OMIM: 602688) heterogeneous nuclear rib ( 285) 597 63.3 8.1e-10
XP_011536665 (OMIM: 603328) PREDICTED: RNA-binding ( 332) 592 63.0 1.1e-09
NP_620412 (OMIM: 607897) RNA-binding protein Musas ( 328) 591 62.9 1.2e-09
XP_005257072 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 585 62.4 1.7e-09
XP_005257071 (OMIM: 607897) PREDICTED: RNA-binding ( 346) 585 62.4 1.7e-09
NP_001003810 (OMIM: 601324) heterogeneous nuclear ( 287) 580 61.9 2.1e-09
XP_011536664 (OMIM: 603328) PREDICTED: RNA-binding ( 343) 580 62.0 2.3e-09
NP_001309179 (OMIM: 607897) RNA-binding protein Mu ( 324) 579 61.9 2.4e-09
NP_002129 (OMIM: 601324) heterogeneous nuclear rib ( 306) 576 61.6 2.7e-09
XP_006719466 (OMIM: 603328) PREDICTED: RNA-binding ( 351) 558 60.2 8.1e-09
NP_002433 (OMIM: 603328) RNA-binding protein Musas ( 362) 558 60.3 8.2e-09
XP_011536663 (OMIM: 603328) PREDICTED: RNA-binding ( 362) 558 60.3 8.2e-09
XP_016879637 (OMIM: 607897) PREDICTED: RNA-binding ( 295) 547 59.2 1.4e-08
NP_001193929 (OMIM: 607137,609115) heterogeneous n ( 363) 543 59.1 1.9e-08
NP_733839 (OMIM: 607897) RNA-binding protein Musas ( 251) 539 58.4 2e-08
NP_001309180 (OMIM: 607897) RNA-binding protein Mu ( 255) 539 58.4 2e-08
XP_016880670 (OMIM: 601574,612237) PREDICTED: TATA ( 323) 408 47.9 3.7e-05
XP_011523617 (OMIM: 601574,612237) PREDICTED: TATA ( 501) 408 48.3 4.6e-05
NP_003478 (OMIM: 601574,612237) TATA-binding prote ( 589) 408 48.4 4.9e-05
NP_631961 (OMIM: 601574,612237) TATA-binding prote ( 592) 408 48.4 4.9e-05
XP_016856353 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05
XP_016856356 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05
XP_016856354 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05
NP_031401 (OMIM: 605078,612069) TAR DNA-binding pr ( 414) 404 47.8 5.3e-05
XP_016856352 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05
XP_016856357 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05
XP_016856355 (OMIM: 605078,612069) PREDICTED: TAR ( 414) 404 47.8 5.3e-05
NP_775882 (OMIM: 616142) protein FAM98B [Homo sapi ( 433) 366 44.8 0.00046
NP_000217 (OMIM: 144200,607606) keratin, type I cy ( 623) 342 43.1 0.0021
NP_000418 (OMIM: 152445,604117) loricrin [Homo sap ( 312) 318 40.6 0.006
>>NP_112533 (OMIM: 600124,615422) heterogeneous nuclear (353 aa)
initn: 2488 init1: 2488 opt: 2488 Z-score: 1130.5 bits: 217.7 E(89105): 3.3e-56
Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_112 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
310 320 330 340 350
>>XP_005249786 (OMIM: 600124,615422) PREDICTED: heteroge (353 aa)
initn: 2488 init1: 2488 opt: 2488 Z-score: 1130.5 bits: 217.7 E(89105): 3.3e-56
Smith-Waterman score: 2488; 100.0% identity (100.0% similar) in 353 aa overlap (1-353:1-353)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
250 260 270 280 290 300
310 320 330 340 350
pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
310 320 330 340 350
>>XP_016867598 (OMIM: 600124,615422) PREDICTED: heteroge (341 aa)
initn: 2404 init1: 2404 opt: 2404 Z-score: 1093.6 bits: 210.8 E(89105): 3.7e-54
Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 340 aa overlap (14-353:2-341)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
.::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
10 20 30 40
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
230 240 250 260 270 280
310 320 330 340 350
pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
290 300 310 320 330 340
>>XP_016867599 (OMIM: 600124,615422) PREDICTED: heteroge (341 aa)
initn: 2404 init1: 2404 opt: 2404 Z-score: 1093.6 bits: 210.8 E(89105): 3.7e-54
Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 340 aa overlap (14-353:2-341)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
.::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
10 20 30 40
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
230 240 250 260 270 280
310 320 330 340 350
pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
290 300 310 320 330 340
>>NP_002128 (OMIM: 600124,615422) heterogeneous nuclear (341 aa)
initn: 2404 init1: 2404 opt: 2404 Z-score: 1093.6 bits: 210.8 E(89105): 3.7e-54
Smith-Waterman score: 2404; 99.7% identity (100.0% similar) in 340 aa overlap (14-353:2-341)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
.::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MEREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
10 20 30 40
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGF
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE3 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNY
230 240 250 260 270 280
310 320 330 340 350
pF1KE3 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGRSRY
290 300 310 320 330 340
>>NP_001317177 (OMIM: 605372) heterogeneous nuclear ribo (356 aa)
initn: 1420 init1: 1154 opt: 1450 Z-score: 672.9 bits: 133.0 E(89105): 1e-30
Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:7-354)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
.: ::.:::::::::::::..:::...:.:: :::::::::: .::
NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::.: . :::::: ::::..:::::::::::.::.: :::::.::::.::::::
NP_001 SRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
:::::..::::::.::::.:::.. ::::::::::.:::::::: :::::.:::::::::
NP_001 EDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGPGPGSNFRGGSDGYG
: ::.::::.:::: . :.: ::::. : : :. ::::::: : . . ::: : :
NP_001 NCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGG
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 SGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YD
.: : ::: :::.:: :::.::.:::.. ::::::::::::::::::::: ::
NP_001 GGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYD
240 250 260 270 280
290 300 310 320 330 340
pF1KE3 ------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG
:.::::::.: ::::::::. :: :::::::.:.::: :. :.::::: :: :
NP_001 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG-
290 300 310 320 330 340
350
pF1KE3 SGGSGGYGGRSRY
:::::::.:
NP_001 -GGSGGYGSRRF
350
>>NP_001317176 (OMIM: 605372) heterogeneous nuclear ribo (356 aa)
initn: 1420 init1: 1154 opt: 1450 Z-score: 672.9 bits: 133.0 E(89105): 1e-30
Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:7-354)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
.: ::.:::::::::::::..:::...:.:: :::::::::: .::
NP_001 MEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::.: . :::::: ::::..:::::::::::.::.: :::::.::::.::::::
NP_001 SRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
:::::..::::::.::::.:::.. ::::::::::.:::::::: :::::.:::::::::
NP_001 EDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGH
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGPGPGSNFRGGSDGYG
: ::.::::.:::: . :.: ::::. : : :. ::::::: : . . ::: : :
NP_001 NCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGG
180 190 200 210 220 230
240 250 260 270 280
pF1KE3 SGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YD
.: : ::: :::.:: :::.::.:::.. ::::::::::::::::::::: ::
NP_001 GGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGYGNQGGGYGGGGGYD
240 250 260 270 280
290 300 310 320 330 340
pF1KE3 ------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPGG
:.::::::.: ::::::::. :: :::::::.:.::: :. :.::::: :: :
NP_001 GYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RSSGSPYGGG-YGSG-
290 300 310 320 330 340
350
pF1KE3 SGGSGGYGGRSRY
:::::::.:
NP_001 -GGSGGYGSRRF
350
>>NP_001317178 (OMIM: 605372) heterogeneous nuclear ribo (378 aa)
initn: 1420 init1: 1154 opt: 1450 Z-score: 672.7 bits: 133.1 E(89105): 1e-30
Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:29-376)
10 20 30 40
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK
.: ::.:::::::::::::..:::...:.::
NP_001 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG
:::::::::: .::::::::::.: . :::::: ::::..:::::::::::.::.: :::
NP_001 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV
::.::::.:::::::::::..::::::.::::.:::.. ::::::::::.:::::::: :
NP_001 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 DKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGP
::::.:::::::::: ::.::::.:::: . :.: ::::. : : :. :::::::
NP_001 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGR
190 200 210 220 230
230 240 250 260 270
pF1KE3 GPGSNFRGGSDGYGSGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGY
: . . ::: : :.: : ::: :::.:: :::.::.:::.. :::::::::::
NP_001 GGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGY
240 250 260 270 280 290
280 290 300 310 320
pF1KE3 GNQGGGYGGG--YD------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRN
:::::::::: :: :.::::::.: ::::::::. :: :::::::.:.::: :.
NP_001 GNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RS
300 310 320 330 340 350
330 340 350
pF1KE3 MGGPYGGGNYGPGGSGGSGGYGGRSRY
:.::::: :: : :::::::.:
NP_001 SGSPYGGG-YGSG--GGSGGYGSRRF
360 370
>>NP_919223 (OMIM: 605372) heterogeneous nuclear ribonuc (378 aa)
initn: 1420 init1: 1154 opt: 1450 Z-score: 672.7 bits: 133.1 E(89105): 1e-30
Smith-Waterman score: 1634; 71.1% identity (84.3% similar) in 356 aa overlap (15-350:29-376)
10 20 30 40
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGK
.: ::.:::::::::::::..:::...:.::
NP_919 MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGT
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE3 LTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPG
:::::::::: .::::::::::.: . :::::: ::::..:::::::::::.::.: :::
NP_919 LTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPG
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE3 AHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPV
::.::::.:::::::::::..::::::.::::.:::.. ::::::::::.:::::::: :
NP_919 AHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTV
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE3 DKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFG-F----GDSRGGGGNFGP
::::.:::::::::: ::.::::.:::: . :.: ::::. : : :. :::::::
NP_919 DKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQR-GRGGGSGNFMGRGGNFGGGGGNFGR
190 200 210 220 230
230 240 250 260 270
pF1KE3 GPGSNFRGGSDGYGSGR----GFGDG-YNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGY
: . . ::: : :.: : ::: :::.:: :::.::.:::.. :::::::::::
NP_919 GGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGD--GGNYGGGPGYSS-RGGYGGGGPGY
240 250 260 270 280 290
280 290 300 310 320
pF1KE3 GNQGGGYGGG--YD------NYGGGNYGSG-NYNDFGNYN-QQPSNYGPMKSGNFGGSRN
:::::::::: :: :.::::::.: ::::::::. :: :::::::.:.::: :.
NP_919 GNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMKGGSFGG-RS
300 310 320 330 340 350
330 340 350
pF1KE3 MGGPYGGGNYGPGGSGGSGGYGGRSRY
:.::::: :: : :::::::.:
NP_919 SGSPYGGG-YGSG--GGSGGYGSRRF
360 370
>>NP_112420 (OMIM: 164017,615424,615426) heterogeneous n (372 aa)
initn: 1694 init1: 1173 opt: 1439 Z-score: 667.9 bits: 132.2 E(89105): 1.9e-30
Smith-Waterman score: 1572; 66.5% identity (82.1% similar) in 358 aa overlap (15-351:8-361)
10 20 30 40 50 60
pF1KE3 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR
.: ::.:::::::::::::.::::...:::: :::::::::: .::
NP_112 MSKSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIK
::::::::.... :::::: ::::..:::::::::::.::.: .::::.::::.::::::
NP_112 SRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 EDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGH
:::::::::::::.::::..:::.::: :::::::.:::::::: :::::.:::::.:::
NP_112 EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGH
120 130 140 150 160 170
190 200 210 220 230
pF1KE3 NAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGG--GNFGPGPGSNFRG-----GSDG
: :::::::.::: ..::. ::.:. .:: .:::: :: . : :.:: : :: :
NP_112 NCEVRKALSKQEMASASSSQRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE3 YGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGRGGYGGGGPGYGNQGGGYGGG--YDNY-
:. : ::::::.:. : : ::.:::.:: :::.:: ::::::.::::. ::.:
NP_112 GGGYGGSGDGYNGFGNDGGYG--GGGPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYN
240 250 260 270 280 290
300 310 320 330
pF1KE3 --GGGNYGSGN---------YNDFGNYNQQPSNYGPMKSGNFGGSRNMGGPYGGGNYGPG
:::..:.:. ::::::::.: ::.::::.::::: . ::::::. .
NP_112 NGGGGGFGGGSGSNFGGGGSYNDFGNYNNQSSNFGPMKGGNFGGRSS--GPYGGGGQYFA
300 310 320 330 340
340 350
pF1KE3 GSGGSGGYGGRSRY
..::::: :
NP_112 KPRNQGGYGGSSSSSSYGSGRRF
350 360 370
353 residues in 1 query sequences
63334102 residues in 89105 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Oct 20 17:10:53 2017 done: Fri Oct 20 17:10:54 2017
Total Scan time: 8.980 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]