FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3410, 310 aa
  1>>>pF1KE3410 310 - 310 aa - 310 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0907+/-0.000842; mu= 8.8085+/- 0.051
 mean_var=127.3817+/-25.579, 0's: 0 Z-trim(111.1): 6  B-trim: 30 in 1/52
 Lambda= 0.113637
 statistics sampled from 12099 (12102) to 12099 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.372), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS43462.1 TAF8 gene_id:129685|Hs108|chr6         ( 310) 1995 337.8 6.6e-93


>>CCDS43462.1 TAF8 gene_id:129685|Hs108|chr6              (310 aa)
 initn: 1995 init1: 1995 opt: 1995  Z-score: 1781.5  bits: 337.8 E(32554): 6.6e-93
Smith-Waterman score: 1995; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE3 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MADAAATAGAGGSGTRSGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVET
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFNVDTLPAYAKRSQRMVIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 APPVTNQPVTPKALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SQRRDVERALTRFMAKTGETQSLFKDDVSTFPLIAARPFTIPYLTALLPSELEMQQMEET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DSSEQDEQTDTENLALHISMEDSGAEKENTSVLQQNPSLSGSRNGEENIIDNPYLRPVKK
              250       260       270       280       290       300

              310
pF1KE3 PKIRRKKSLS
       ::::::::::
CCDS43 PKIRRKKSLS
              310




310 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:08:27 2016 done: Sun Nov  6 05:08:27 2016
 Total Scan time:  2.510 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]