Result of FASTA (ccds) for
pFN21AE3403
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3403, 170 aa
1>>>pF1KE3403 170 - 170 aa - 170 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0296+/-0.000581; mu= 13.4603+/- 0.035
mean_var=58.8261+/-11.603, 0's: 0 Z-trim(111.8): 52 B-trim: 3 in 1/49
Lambda= 0.167220
statistics sampled from 12634 (12689) to 12634 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.39), width: 16
Scan time: 1.520
The best scores are: opt bits E(32554)
CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 170) 1160 287.4 2.9e-78
CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 147) 955 237.9 2e-63
CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 ( 370) 956 238.3 3.7e-63
CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 ( 145) 881 220.0 4.6e-58
CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 716 180.2 3.4e-46
CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 103) 614 155.5 8.6e-39
CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 ( 105) 348 91.4 1.8e-19
>>CCDS13426.1 UBE2V1 gene_id:7335|Hs108|chr20 (170 aa)
initn: 1160 init1: 1160 opt: 1160 Z-score: 1518.5 bits: 287.4 E(32554): 2.9e-78
Smith-Waterman score: 1160; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)
10 20 30 40 50 60
pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
70 80 90 100 110 120
130 140 150 160 170
pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
130 140 150 160 170
>>CCDS33483.1 UBE2V1 gene_id:7335|Hs108|chr20 (147 aa)
initn: 955 init1: 955 opt: 955 Z-score: 1252.2 bits: 237.9 E(32554): 2e-63
Smith-Waterman score: 955; 100.0% identity (100.0% similar) in 140 aa overlap (31-170:8-147)
10 20 30 40 50 60
pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
::::::::::::::::::::::::::::::
CCDS33 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
10 20 30
70 80 90 100 110 120
pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
100 110 120 130 140
>>CCDS13424.1 UBE2V1 gene_id:387522|Hs108|chr20 (370 aa)
initn: 955 init1: 955 opt: 956 Z-score: 1247.5 bits: 238.3 E(32554): 3.7e-63
Smith-Waterman score: 956; 96.6% identity (97.3% similar) in 146 aa overlap (27-170:225-370)
10 20 30 40 50
pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHC--KGVKVPRNFRLLEELEEGQKGVGDG
. : ::::::::::::::::::::::::
CCDS13 LPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGVKVPRNFRLLEELEEGQKGVGDG
200 210 220 230 240 250
60 70 80 90 100 110
pF1KE3 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN
260 270 280 290 300 310
120 130 140 150 160 170
pF1KE3 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
320 330 340 350 360 370
>>CCDS43738.1 UBE2V2 gene_id:7336|Hs108|chr8 (145 aa)
initn: 906 init1: 881 opt: 881 Z-score: 1155.8 bits: 220.0 E(32554): 4.6e-58
Smith-Waterman score: 881; 91.4% identity (96.4% similar) in 140 aa overlap (31-170:6-145)
10 20 30 40 50 60
pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
::::::::::::::::::::::::::::::
CCDS43 MAVSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
10 20 30
70 80 90 100 110 120
pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
::::::::::::::::::::: :::::::::.::::::::::: :::::::::::.:.:.
CCDS43 EDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSS
40 50 60 70 80 90
130 140 150 160 170
pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
:.:: :.: ::::::::::::::::::::::::::::::::::::: :.:
CCDS43 GMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN
100 110 120 130 140
>>CCDS74740.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa)
initn: 716 init1: 716 opt: 716 Z-score: 942.8 bits: 180.2 E(32554): 3.4e-46
Smith-Waterman score: 716; 100.0% identity (100.0% similar) in 105 aa overlap (66-170:1-105)
40 50 60 70 80 90
pF1KE3 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG
::::::::::::::::::::::::::::::
CCDS74 MTLTRWTGMIIGPPRTIYENRIYSLKIECG
10 20 30
100 110 120 130 140 150
pF1KE3 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKE
40 50 60 70 80 90
160 170
pF1KE3 NMKLPQPPEGQCYSN
:::::::::::::::
CCDS74 NMKLPQPPEGQCYSN
100
>>CCDS13427.1 UBE2V1 gene_id:7335|Hs108|chr20 (103 aa)
initn: 610 init1: 610 opt: 614 Z-score: 809.9 bits: 155.5 E(32554): 8.6e-39
Smith-Waterman score: 614; 87.9% identity (92.5% similar) in 107 aa overlap (64-170:3-103)
40 50 60 70 80 90
pF1KE3 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE
::..: .:. .:::::::::::::
CCDS13 MKEDLNLENFTA------KTIYENRIYSLKIE
10 20
100 110 120 130 140 150
pF1KE3 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMS
30 40 50 60 70 80
160 170
pF1KE3 KENMKLPQPPEGQCYSN
:::::::::::::::::
CCDS13 KENMKLPQPPEGQCYSN
90 100
>>CCDS58775.1 UBE2V1 gene_id:7335|Hs108|chr20 (105 aa)
initn: 657 init1: 348 opt: 348 Z-score: 463.0 bits: 91.4 E(32554): 1.8e-19
Smith-Waterman score: 577; 70.0% identity (70.0% similar) in 140 aa overlap (31-170:8-105)
10 20 30 40 50 60
pF1KE3 MPGEVQASYLKSQSKLSDEGRLEPRKFHCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
::::::::::::::::::::::::::::::
CCDS58 MAATTGSGVKVPRNFRLLEELEEGQKGVGDGTVSWGL
10 20 30
70 80 90 100 110 120
pF1KE3 EDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSN
::::::::::::::::::::
CCDS58 EDDEDMTLTRWTGMIIGPPR----------------------------------------
40 50
130 140 150 160 170
pF1KE3 GVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 --VDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQCYSN
60 70 80 90 100
170 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:11:13 2016 done: Sun Nov 6 05:11:13 2016
Total Scan time: 1.520 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]