Result of FASTA (ccds) for
pFN21AE3401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3401, 149 aa
1>>>pF1KE3401 149 - 149 aa - 149 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8659+/-0.000553; mu= 14.2545+/- 0.034
mean_var=61.9096+/-12.326, 0's: 0 Z-trim(112.8): 68 B-trim: 0 in 0/52
Lambda= 0.163003
statistics sampled from 13445 (13514) to 13445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.415), width: 16
Scan time: 1.850
The best scores are: opt bits E(32554)
CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 149) 1054 255.3 1e-68
CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 147) 999 242.4 7.7e-65
CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 148) 987 239.6 5.5e-64
CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 147) 983 238.6 1e-63
CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 ( 147) 949 230.6 2.7e-61
CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 147) 919 223.6 3.6e-59
CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 ( 118) 837 204.2 1.9e-53
CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 ( 118) 827 201.9 9.7e-53
CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 ( 109) 692 170.1 3.3e-43
CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 ( 207) 651 160.7 4.4e-40
CCDS2638.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 193) 646 159.5 9.4e-40
CCDS2637.1 UBE2E2 gene_id:7325|Hs108|chr3 ( 201) 646 159.5 9.7e-40
CCDS56244.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 160) 643 158.7 1.3e-39
CCDS2639.1 UBE2E1 gene_id:7324|Hs108|chr3 ( 176) 576 143.0 7.8e-35
CCDS31875.1 UBE2N gene_id:7334|Hs108|chr12 ( 152) 444 111.9 1.5e-25
CCDS14580.1 UBE2A gene_id:7319|Hs108|chrX ( 152) 435 109.8 6.7e-25
CCDS4174.1 UBE2B gene_id:7320|Hs108|chr5 ( 152) 429 108.4 1.8e-24
CCDS1425.1 UBE2T gene_id:29089|Hs108|chr1 ( 197) 422 106.8 6.8e-24
CCDS13790.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 154) 387 98.5 1.7e-21
CCDS58795.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 212) 383 97.6 4.2e-21
CCDS33976.1 UBE2K gene_id:3093|Hs108|chr4 ( 200) 380 96.9 6.5e-21
CCDS78500.1 UBE2A gene_id:7319|Hs108|chrX ( 119) 376 95.8 8.3e-21
CCDS33114.1 UBE2S gene_id:27338|Hs108|chr19 ( 222) 360 92.2 1.8e-19
CCDS58796.1 UBE2L3 gene_id:7332|Hs108|chr22 ( 122) 354 90.6 3e-19
CCDS47043.1 UBE2K gene_id:3093|Hs108|chr4 ( 157) 338 87.0 5.1e-18
CCDS7960.1 UBE2L6 gene_id:9246|Hs108|chr11 ( 153) 337 86.7 5.8e-18
CCDS13370.1 UBE2C gene_id:11065|Hs108|chr20 ( 179) 337 86.8 6.6e-18
CCDS10433.1 UBE2I gene_id:7329|Hs108|chr16 ( 158) 333 85.8 1.1e-17
CCDS13374.1 UBE2C gene_id:11065|Hs108|chr20 ( 140) 326 84.1 3.3e-17
CCDS627.1 UBE2U gene_id:148581|Hs108|chr1 ( 226) 312 81.0 4.7e-16
CCDS12987.1 UBE2M gene_id:9040|Hs108|chr19 ( 183) 308 80.0 7.6e-16
CCDS5814.1 UBE2H gene_id:7328|Hs108|chr7 ( 183) 303 78.8 1.7e-15
CCDS32532.1 UBE2G1 gene_id:7326|Hs108|chr17 ( 170) 301 78.3 2.2e-15
CCDS13372.1 UBE2C gene_id:11065|Hs108|chr20 ( 150) 293 76.4 7.5e-15
CCDS13714.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 165) 279 73.1 7.9e-14
CCDS2523.1 UBE2F gene_id:140739|Hs108|chr2 ( 185) 277 72.7 1.2e-13
CCDS63175.1 UBE2F gene_id:140739|Hs108|chr2 ( 161) 268 70.5 4.7e-13
CCDS47874.2 UBE2W gene_id:55284|Hs108|chr8 ( 180) 267 70.3 6e-13
CCDS6546.1 UBE2R2 gene_id:54926|Hs108|chr9 ( 238) 262 69.2 1.7e-12
CCDS47875.2 UBE2W gene_id:55284|Hs108|chr8 ( 191) 258 68.2 2.7e-12
CCDS47044.1 UBE2K gene_id:3093|Hs108|chr4 ( 149) 249 66.0 9.7e-12
CCDS12030.1 CDC34 gene_id:997|Hs108|chr19 ( 236) 247 65.7 1.9e-11
CCDS33586.1 UBE2G2 gene_id:7327|Hs108|chr21 ( 137) 241 64.1 3.3e-11
>>CCDS3659.1 UBE2D3 gene_id:7323|Hs108|chr4 (149 aa)
initn: 1054 init1: 1054 opt: 1054 Z-score: 1347.4 bits: 255.3 E(32554): 1e-68
Smith-Waterman score: 1054; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
70 80 90 100 110 120
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
130 140
>>CCDS3660.1 UBE2D3 gene_id:7323|Hs108|chr4 (147 aa)
initn: 999 init1: 999 opt: 999 Z-score: 1277.5 bits: 242.4 E(32554): 7.7e-65
Smith-Waterman score: 999; 97.9% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::::::::::::::::::
CCDS36 LVPEIARIYKTDRDKYNRISREWTQKYAM
120 130 140
>>CCDS3661.1 UBE2D3 gene_id:7323|Hs108|chr4 (148 aa)
initn: 987 init1: 987 opt: 987 Z-score: 1262.2 bits: 239.6 E(32554): 5.5e-64
Smith-Waterman score: 987; 95.8% identity (99.3% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
::::::::::::::::::..::::.::::
CCDS36 LVPEIARIYKTDRDKYNRLAREWTEKYAML
120 130 140
>>CCDS43369.1 UBE2D2 gene_id:7322|Hs108|chr5 (147 aa)
initn: 983 init1: 983 opt: 983 Z-score: 1257.2 bits: 238.6 E(32554): 1e-63
Smith-Waterman score: 983; 95.8% identity (98.6% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: . :::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::::::::::::.:::::.:::::::::
CCDS43 LVPEIARIYKTDREKYNRIAREWTQKYAM
120 130 140
>>CCDS5474.1 UBE2D4 gene_id:51619|Hs108|chr7 (147 aa)
initn: 949 init1: 949 opt: 949 Z-score: 1214.0 bits: 230.6 E(32554): 2.7e-61
Smith-Waterman score: 949; 90.3% identity (97.9% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::.:: :::::::::::::::.::::::::::::::::::::::::::::
CCDS54 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
:::::::::::::.::::::::::::::::::::::::::.:::::::::::::::::::
CCDS54 DYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
::::::. ::.::.::::..:::::::::
CCDS54 LVPEIAHTYKADREKYNRLAREWTQKYAM
120 130 140
>>CCDS7252.1 UBE2D1 gene_id:7321|Hs108|chr10 (147 aa)
initn: 919 init1: 919 opt: 919 Z-score: 1175.9 bits: 223.6 E(32554): 3.6e-59
Smith-Waterman score: 919; 86.8% identity (96.5% similar) in 144 aa overlap (6-149:4-147)
10 20 30 40 50 60
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT
: ..:::::: :::::.:::::::::.:::::::::: :: :::::::::.::::
CCDS72 MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPT
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 DYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDP
::::::::.::::.::::::::::::::::::::::::::.:::::::::::::::::::
CCDS72 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP
60 70 80 90 100 110
130 140
pF1KE3 LVPEIARIYKTDRDKYNRISREWTQKYAM
:::.::.:::.:..:::: .:::::::::
CCDS72 LVPDIAQIYKSDKEKYNRHAREWTQKYAM
120 130 140
>>CCDS75172.1 UBE2D3 gene_id:7323|Hs108|chr4 (118 aa)
initn: 837 init1: 837 opt: 837 Z-score: 1073.0 bits: 204.2 E(32554): 1.9e-53
Smith-Waterman score: 837; 100.0% identity (100.0% similar) in 118 aa overlap (32-149:1-118)
10 20 30 40 50 60
pF1KE3 LSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD
::::::::::::::::::::::::::::::
CCDS75 MFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30
70 80 90 100 110 120
pF1KE3 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL
40 50 60 70 80 90
130 140
pF1KE3 VPEIARIYKTDRDKYNRISREWTQKYAM
::::::::::::::::::::::::::::
CCDS75 VPEIARIYKTDRDKYNRISREWTQKYAM
100 110
>>CCDS47275.1 UBE2D2 gene_id:7322|Hs108|chr5 (118 aa)
initn: 827 init1: 827 opt: 827 Z-score: 1060.3 bits: 201.9 E(32554): 9.7e-53
Smith-Waterman score: 827; 98.3% identity (100.0% similar) in 118 aa overlap (32-149:1-118)
10 20 30 40 50 60
pF1KE3 LSNRKCLSKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTD
::::::::::::::::::::::::::::::
CCDS47 MFHWQATIMGPNDSPYQGGVFFLTIHFPTD
10 20 30
70 80 90 100 110 120
pF1KE3 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPL
40 50 60 70 80 90
130 140
pF1KE3 VPEIARIYKTDRDKYNRISREWTQKYAM
::::::::::::.:::::.:::::::::
CCDS47 VPEIARIYKTDREKYNRIAREWTQKYAM
100 110
>>CCDS73139.1 UBE2D1 gene_id:7321|Hs108|chr10 (109 aa)
initn: 689 init1: 689 opt: 692 Z-score: 889.2 bits: 170.1 E(32554): 3.3e-43
Smith-Waterman score: 692; 87.3% identity (96.4% similar) in 110 aa overlap (40-149:1-109)
10 20 30 40 50 60
pF1KE3 KELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKV
: : :: :::::::::.::::::::::::.
CCDS73 MTP-DSAYQGGVFFLTVHFPTDYPFKPPKI
10 20
70 80 90 100 110 120
pF1KE3 AFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIY
::::.::::::::::::::::::::::::::.::::::::::::::::::::::.::.::
CCDS73 AFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIY
30 40 50 60 70 80
130 140
pF1KE3 KTDRDKYNRISREWTQKYAM
:.:..:::: .:::::::::
CCDS73 KSDKEKYNRHAREWTQKYAM
90 100
>>CCDS2282.1 UBE2E3 gene_id:10477|Hs108|chr2 (207 aa)
initn: 651 init1: 651 opt: 651 Z-score: 833.1 bits: 160.7 E(32554): 4.4e-40
Smith-Waterman score: 651; 63.0% identity (84.2% similar) in 146 aa overlap (3-148:61-206)
10 20 30
pF1KE3 MLSNRKCLSKELSDLARDPPAQCSAGPVGDDM
.. : ..:::.... ::: .::::: ::..
CCDS22 EPEEQEERKPSATQQKKNTKLSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNI
40 50 60 70 80 90
40 50 60 70 80 90
pF1KE3 FHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILR
..:..::.:: : :.:::::: : : .:::::::::.: ::::: ::::.: ::::::.
CCDS22 YEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILK
100 110 120 130 140 150
100 110 120 130 140
pF1KE3 SQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM
..:::::::::::::::::: : :: :::: :: : :.: ...::.:.::..::
CCDS22 DNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYAT
160 170 180 190 200
149 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:12:15 2016 done: Sun Nov 6 05:12:15 2016
Total Scan time: 1.850 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]