Result of FASTA (omim) for
pFN21AE3322
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3322, 913 aa
1>>>pF1KE3322 913 - 913 aa - 913 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7420+/-0.000443; mu= 14.1940+/- 0.027
mean_var=107.3936+/-23.083, 0's: 0 Z-trim(112.4): 177 B-trim: 0 in 0/53
Lambda= 0.123761
statistics sampled from 21107 (21317) to 21107 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.61), E-opt: 0.2 (0.25), width: 16
Scan time: 12.300
The best scores are: opt bits E(85289)
NP_114113 (OMIM: 300309) ubiquitin carboxyl-termin ( 913) 6036 1089.5 0
XP_016885381 (OMIM: 300309) PREDICTED: ubiquitin c ( 913) 6036 1089.5 0
NP_065954 (OMIM: 609546) ubiquitin carboxyl-termin ( 922) 1690 313.5 3e-84
XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 255 57.3 4.1e-07
XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin c ( 928) 255 57.3 4.1e-07
NP_001269978 (OMIM: 603158) ubiquitin carboxyl-ter (1012) 255 57.3 4.4e-07
XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07
XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07
XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07
XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin c (1089) 255 57.3 4.7e-07
XP_011520495 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 255 57.3 4.8e-07
NP_001122082 (OMIM: 603158) ubiquitin carboxyl-ter (1118) 255 57.3 4.8e-07
NP_005145 (OMIM: 603158) ubiquitin carboxyl-termin (1118) 255 57.3 4.8e-07
XP_006720824 (OMIM: 603158) PREDICTED: ubiquitin c (1118) 255 57.3 4.8e-07
XP_016864046 (OMIM: 612849) PREDICTED: ubiquitin c ( 341) 238 54.0 1.5e-06
NP_001127695 (OMIM: 612849) ubiquitin carboxyl-ter ( 359) 238 54.0 1.5e-06
NP_073743 (OMIM: 612849) ubiquitin carboxyl-termin ( 366) 238 54.0 1.5e-06
XP_016861124 (OMIM: 614471) PREDICTED: ubiquitin c ( 871) 241 54.8 2.2e-06
XP_005264888 (OMIM: 614471) PREDICTED: ubiquitin c (1268) 241 54.9 3e-06
XP_016861123 (OMIM: 614471) PREDICTED: ubiquitin c (1270) 241 54.9 3e-06
XP_016861122 (OMIM: 614471) PREDICTED: ubiquitin c (1281) 241 54.9 3e-06
XP_016861121 (OMIM: 614471) PREDICTED: ubiquitin c (1283) 241 54.9 3e-06
XP_016861120 (OMIM: 614471) PREDICTED: ubiquitin c (1283) 241 54.9 3e-06
XP_016861119 (OMIM: 614471) PREDICTED: ubiquitin c (1285) 241 54.9 3e-06
XP_016861118 (OMIM: 614471) PREDICTED: ubiquitin c (1303) 241 54.9 3.1e-06
XP_016861117 (OMIM: 614471) PREDICTED: ubiquitin c (1305) 241 54.9 3.1e-06
XP_016861116 (OMIM: 614471) PREDICTED: ubiquitin c (1307) 241 54.9 3.1e-06
XP_016861115 (OMIM: 614471) PREDICTED: ubiquitin c (1318) 241 54.9 3.1e-06
NP_006668 (OMIM: 614471) ubiquitin carboxyl-termin (1318) 241 54.9 3.1e-06
XP_016861114 (OMIM: 614471) PREDICTED: ubiquitin c (1320) 241 54.9 3.1e-06
XP_005264887 (OMIM: 614471) PREDICTED: ubiquitin c (1322) 241 54.9 3.1e-06
XP_016861113 (OMIM: 614471) PREDICTED: ubiquitin c (1332) 241 54.9 3.1e-06
XP_006713015 (OMIM: 614471) PREDICTED: ubiquitin c (1367) 241 54.9 3.2e-06
XP_006713014 (OMIM: 614471) PREDICTED: ubiquitin c (1368) 241 54.9 3.2e-06
XP_006713013 (OMIM: 614471) PREDICTED: ubiquitin c (1369) 241 54.9 3.2e-06
XP_016861112 (OMIM: 614471) PREDICTED: ubiquitin c (1369) 241 54.9 3.2e-06
XP_016861111 (OMIM: 614471) PREDICTED: ubiquitin c (1371) 241 54.9 3.2e-06
XP_016861110 (OMIM: 614471) PREDICTED: ubiquitin c (1371) 241 54.9 3.2e-06
NP_001186091 (OMIM: 614471) ubiquitin carboxyl-ter (1372) 241 54.9 3.2e-06
XP_006713012 (OMIM: 614471) PREDICTED: ubiquitin c (1373) 241 54.9 3.2e-06
XP_016861109 (OMIM: 614471) PREDICTED: ubiquitin c (1381) 241 54.9 3.2e-06
XP_006713011 (OMIM: 614471) PREDICTED: ubiquitin c (1382) 241 54.9 3.2e-06
XP_016861108 (OMIM: 614471) PREDICTED: ubiquitin c (1383) 241 54.9 3.2e-06
XP_016861107 (OMIM: 614471) PREDICTED: ubiquitin c (1384) 241 54.9 3.2e-06
NP_001186090 (OMIM: 614471) ubiquitin carboxyl-ter (1384) 241 54.9 3.2e-06
XP_005264886 (OMIM: 614471) PREDICTED: ubiquitin c (1386) 241 54.9 3.2e-06
XP_006713016 (OMIM: 614471) PREDICTED: ubiquitin c (1404) 241 54.9 3.3e-06
XP_006713010 (OMIM: 614471) PREDICTED: ubiquitin c (1405) 241 54.9 3.3e-06
XP_016861106 (OMIM: 614471) PREDICTED: ubiquitin c (1406) 241 54.9 3.3e-06
XP_005264884 (OMIM: 614471) PREDICTED: ubiquitin c (1408) 241 54.9 3.3e-06
>>NP_114113 (OMIM: 300309) ubiquitin carboxyl-terminal h (913 aa)
initn: 6036 init1: 6036 opt: 6036 Z-score: 5827.3 bits: 1089.5 E(85289): 0
Smith-Waterman score: 6036; 99.9% identity (99.9% similar) in 913 aa overlap (1-913:1-913)
10 20 30 40 50 60
pF1KE3 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKNVKTSKFVAFDRIINPTKDL
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
NP_114 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKYVKTSKFVAFDRIINPTKDL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE3 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ
850 860 870 880 890 900
910
pF1KE3 LNSKEVEETLQKE
:::::::::::::
NP_114 LNSKEVEETLQKE
910
>>XP_016885381 (OMIM: 300309) PREDICTED: ubiquitin carbo (913 aa)
initn: 6036 init1: 6036 opt: 6036 Z-score: 5827.3 bits: 1089.5 E(85289): 0
Smith-Waterman score: 6036; 99.9% identity (99.9% similar) in 913 aa overlap (1-913:1-913)
10 20 30 40 50 60
pF1KE3 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVFS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STTQKEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGELSENQHKKR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECESSCI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNATGNPYLDDIGLLQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEIKEML
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNFPKQV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKEPLAHLMTY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKNVKTSKFVAFDRIINPTKDL
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
XP_016 LEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKYVKTSKFVAFDRIINPTKDL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTKNLLRPTKLNL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE3 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKSNRNSLLALGSNKNPRNKDILDKIKSKAKETKRNDDKGDHTYRLISVVSHLGKTLKSG
790 800 810 820 830 840
850 860 870 880 890 900
pF1KE3 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMHNEIFEEMLKREENAQ
850 860 870 880 890 900
910
pF1KE3 LNSKEVEETLQKE
:::::::::::::
XP_016 LNSKEVEETLQKE
910
>>NP_065954 (OMIM: 609546) ubiquitin carboxyl-terminal h (922 aa)
initn: 2104 init1: 1067 opt: 1690 Z-score: 1633.5 bits: 313.5 E(85289): 3e-84
Smith-Waterman score: 2399; 46.4% identity (70.7% similar) in 920 aa overlap (1-905:1-904)
10 20 30 40 50
pF1KE3 MAALFLRGFVQIGNCKTGISKSKEAFIEAVERKKKDRLVLYFKSGKY-STFRLSDNIQNV
: .: . ::.:: . :::..: :::.::.:.:.:. .::. :::::. :.::.::..:
NP_065 MISLKVCGFIQIWSQKTGMTKLKEALIETVQRQKEIKLVVTFKSGKFIRIFQLSNNIRSV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE3 VLKSYRGNQNHLHLTLQNNNGLFIEGLSSTDAEQLKIFLDRVHQNEVQPPVRPGKGGSVF
::. . :.::.:::.:: :::. :: ::.::..::: .:::. : :.. :::
NP_065 VLRHCKKRQSHLRLTLKNNVFLFIDKLSYRDAKQLNMFLDIIHQNKSQQPMKSDDDWSVF
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE3 SSTTQ-KEINKTSFHKVDEKSSSKSFEIAKGSGTGVLQRMPLLTSKLTLTCGE-LSENQH
: .. :::.::::... .: : :.:::. :: . . :::
NP_065 ESRNMLKEIDKTSFYSICNKPS--------------YQKMPLFMSKSPTHVKKGILENQG
130 140 150 160
180 190 200 210 220 230
pF1KE3 KKRKRMLSSSSEMNEEFLKENNSVEYKKSKADCSRCVSYNREKQLKLKELEENKKLECES
: . :::. . ::..:::.: : :: :.: . .. ::.. .:..::... :.
NP_065 GKGQNTLSSDVQTNEDILKEDNPVPNKKYKTDSLKYIQSNRKNPSSLEDLEKDRDLKLGP
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE3 SCIMNATGNPYLDDIGL-LQALTEKMVLVFLLQQGYSDGYTKWDKLKLFFELFPEKICHG
: : .::: ::. : :.:. : :. :. .:.: . .: .. .. ... .:
NP_065 SFNTNCNGNPNLDETVLATQTLNAKNGLTSPLEPEHSQGDPRCNKAQVPLDSHSQQLQQG
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE3 LPNLGNTCYMNAVLQSLLSIPSFADDLLNQSFPWGKIPLNALTMCLARLLFFKDTYNIEI
.::::::::::::::::..:::::::::.:. :: ::..:: : :..:: .:: . .:
NP_065 FPNLGNTCYMNAVLQSLFAIPSFADDLLTQGVPWEYIPFEALIMTLTQLLALKDFCSTKI
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE3 KEMLLLNLKKAISAAAEIFHGNAQNDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGEDNF
:. :: :.::.:::.:::: :: ::::::::..::::::..:::::. . .: :..:
NP_065 KRELLGNVKKVISAVAEIFSGNMQNDAHEFLGQCLDQLKEDMEKLNATLNTGKECGDENS
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE3 PKQVFADDPDTSGFSCPVITNFELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHP
:. . . :. : :::..:::.:: :. :::::...::.: :::::::: :. : :
NP_065 SPQMHVGSAATKVFVCPVVANFEFELQLSLICKACGHAVLKVEPNNYLSINLHQETKPLP
410 420 430 440 450 460
480 490 500 510 520 530
pF1KE3 SSIQSTFDLFFGAEELEYKCAKCEHKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKND
:::...:::: :::::.: :..:. :. :.:::: :.::.::::::.:. : ::.
NP_065 LSIQNSLDLFFKEEELEYNCQMCKQKSCVARHTFSRLSRVLIIHLKRYSFNNAWLLVKNN
470 480 490 500 510 520
540 550 560 570 580 590
pF1KE3 QEVIISKYLKVSSHCNEGTRPPLPLSEDGEITDFQLLKVIRKMTS---GNISVSWPATKE
..: : : :..::.:::.:.:::::: .. . ..:.: ..: : . .. : :.:
NP_065 EQVYIPKSLSLSSYCNESTKPPLPLSSSAPVGKCEVLEVSQEMISEINSPLTPSMKLTSE
530 540 550 560 570 580
600 610 620 630 640 650
pF1KE3 SKDILAPHIGSDKESEQKKGQTVFKGASRRQQQKYLGKNSKPNELESVYSGDRAFIEKE-
:.: :. . ::... .. : ::..:.:. : .:.. : : :. :::. :::
NP_065 SSDSLVLPVEPDKNADLQRFQRDCGDASQEQHQRDL-ENGSALESELVHFRDRAIGEKEL
590 600 610 620 630 640
660 670 680 690 700 710
pF1KE3 PLAHLMTYLEDTSLCQFHKAGGKPASSPGTPLSKVDFQTVPENPKRKKNVKTSKFVAF--
:.: . : :: ... ::: ::: : : .: .: ::..:. .: ::. :: :
NP_065 PVADSLMDQGDISLPVMYEDGGKLISSPDTRLVEVHLQEVPQHPELQKYEKTNTFVEFNF
650 660 670 680 690 700
720 730 740 750 760 770
pF1KE3 DRIINPTKDLYEDKNIRIPERFQKVSEQTQQCDGMRICEQAPQQALPQSFPKPGTQGHTK
: . . :. .:. :. :::: : ..:: ::: : .. ::: : . : .: ::.
NP_065 DSVTESTNGFYDCKENRIPEGSQGMAEQLQQCIEESIIDEFLQQAPPPGVRKLDAQEHTE
710 720 730 740 750 760
780 790 800 810 820
pF1KE3 NLL-RPTKLNLQKSNRNSLLALGSNKNPRNKDILD--KIKSKAKETKRNDDKGD--HTYR
. : . :.: :::.. : : ::::. :: ::.::: . ...::: :: :: ..::
NP_065 ETLNQSTELRLQKADLNHLGALGSD-NPGNKNILDAENTRGEAKELTRNVKMGDPLQAYR
770 780 790 800 810 820
830 840 850 860 870 880
pF1KE3 LISVVSHLGKTLKSGHYICDAYDFEKQIWFTYDDMRVLGIQEAQMQEDRRCTGYIFFYMH
:::::::.:.. .::::: :.:::.:: ::::.:. : :.:..::: : .::::::::
NP_065 LISVVSHIGSSPNSGHYISDVYDFQKQAWFTYNDLCVSEISETKMQEARLHSGYIFFYMH
830 840 850 860 870 880
890 900 910
pF1KE3 NEIFEEMLKREENAQLNSKEVEETLQKE
: ::::.:.. ::..: : .
NP_065 NGIFEELLRKAENSRLPSTQAGVIPQGEYEGDSLYRPA
890 900 910 920
>>XP_016878210 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 232 init1: 119 opt: 255 Z-score: 248.7 bits: 57.3 E(85289): 4.1e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:588-827)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
560 570 580 590 600 610
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
620 630 640 650 660 670
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
680 690 700 710 720 730
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
740 750 760 770 780 790
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
800 810 820 830 840 850
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
860 870 880 890 900 910
>>XP_016878211 (OMIM: 603158) PREDICTED: ubiquitin carbo (928 aa)
initn: 232 init1: 119 opt: 255 Z-score: 248.7 bits: 57.3 E(85289): 4.1e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:588-827)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
560 570 580 590 600 610
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
620 630 640 650 660 670
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
680 690 700 710 720 730
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
740 750 760 770 780 790
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
800 810 820 830 840 850
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
860 870 880 890 900 910
>>NP_001269978 (OMIM: 603158) ubiquitin carboxyl-termina (1012 aa)
initn: 265 init1: 119 opt: 255 Z-score: 248.2 bits: 57.3 E(85289): 4.4e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:672-911)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
NP_001 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
650 660 670 680 690 700
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
NP_001 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
710 720 730 740 750 760
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
NP_001 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
770 780 790 800 810 820
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
NP_001 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
830 840 850 860 870
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
NP_001 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
880 890 900 910 920 930
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
NP_001 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
940 950 960 970 980 990
>>XP_016878208 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
720 730 740 750 760 770
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
780 790 800 810 820 830
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
840 850 860 870 880 890
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
900 910 920 930 940 950
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
960 970 980 990 1000 1010
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
1020 1030 1040 1050 1060 1070
>>XP_006720825 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
XP_006 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
720 730 740 750 760 770
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
XP_006 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
780 790 800 810 820 830
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
XP_006 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
840 850 860 870 880 890
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
XP_006 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
900 910 920 930 940 950
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
XP_006 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
960 970 980 990 1000 1010
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
XP_006 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
1020 1030 1040 1050 1060 1070
>>XP_016878209 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
720 730 740 750 760 770
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
780 790 800 810 820 830
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
840 850 860 870 880 890
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
900 910 920 930 940 950
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
960 970 980 990 1000 1010
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
1020 1030 1040 1050 1060 1070
>>XP_016878207 (OMIM: 603158) PREDICTED: ubiquitin carbo (1089 aa)
initn: 265 init1: 119 opt: 255 Z-score: 247.7 bits: 57.3 E(85289): 4.7e-07
Smith-Waterman score: 255; 25.8% identity (56.1% similar) in 244 aa overlap (296-527:749-988)
270 280 290 300 310 320
pF1KE3 FLLQQGYSDGYTKWDKLKLFFELFPEKICHGLPNLGNTCYMNAVLQSLLSIPSFADDLLN
:: :::::::::..:: : . : .:: .:
XP_016 CYPKAEISRLSASQIRNLNPVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLAD-YFN
720 730 740 750 760 770
330 340 350 360 370 380
pF1KE3 QSFPWGKIPLNALTMCLARL-----LFFKDTYNIEIKEMLLLNLKKAISAAAEIFHGNAQ
.. : . : ... ...: .. . . . ..: .:. . : : .:
XP_016 RNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQFAGYSQ
780 790 800 810 820 830
390 400 410 420 430
pF1KE3 NDAHEFLAHCLDQLKDNMEKLNTIWKPKSEFGE--DNFPKQVFADDPDTSGFSCPVITNF
.:..:.: .: :.....: .. . : : .. :.: : . . ... :
XP_016 QDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALF
840 850 860 870 880 890
440 450 460 470 480 490
pF1KE3 ELELLHSIACKACGQVILKTELNNYLSINLPQRIKAHPSSIQSTFDLFFGAEEL----EY
. .. .. : .: . : :::. : . : ..:. . :: :.: ..
XP_016 QGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSK---CTLQDCLRLFSKEEKLTDNNRF
900 910 920 930 940 950
500 510 520 530 540 550
pF1KE3 KCAKCE-HKTSVGVHSFSRLPRILIVHLKRYSLNEFCALKKNDQEVIISKYLKVSSHCNE
:..:. .. :. . .:: .:.:::::.: .
XP_016 YCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG
960 970 980 990 1000 1010
560 570 580 590 600 610
pF1KE3 GTRPPLPLSEDGEITDFQLLKVIRKMTSGNISVSWPATKESKDILAPHIGSDKESEQKKG
XP_016 PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYI
1020 1030 1040 1050 1060 1070
913 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 06:26:47 2016 done: Tue Nov 8 06:26:49 2016
Total Scan time: 12.300 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]