FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3307, 798 aa
  1>>>pF1KE3307 798 - 798 aa - 798 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7039+/-0.000902; mu= 10.3628+/- 0.055
 mean_var=154.1999+/-30.374, 0's: 0 Z-trim(111.4): 23  B-trim: 0 in 0/54
 Lambda= 0.103284
 statistics sampled from 12334 (12347) to 12334 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.379), width:  16
 Scan time:  4.740

The best scores are:                                      opt bits E(32554)
CCDS11036.1 GSG2 gene_id:83903|Hs108|chr17         ( 798) 5397 816.5       0


>>CCDS11036.1 GSG2 gene_id:83903|Hs108|chr17              (798 aa)
 initn: 5397 init1: 5397 opt: 5397  Z-score: 4354.0  bits: 816.5 E(32554):    0
Smith-Waterman score: 5397; 99.7% identity (99.9% similar) in 798 aa overlap (1-798:1-798)

               10        20        30        40        50        60
pF1KE3 MAASLPGPGSRLFRTYGAADGRRQRRPGREAAQWFPPQDRRRFFNSSGSSDASIGDPSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAASLPGPGSRLFRTYGAADGRRQRRPGREAAQWFPPQDRRRFFNSSGSSDASIGDPSQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 DDPDDPDDPDFPGSPVRRRRRCPGGRVPKDRPSLTVTPKRWKLRARPSLTVTPRRLGLRA
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS11 DDPDDPDDPDFPGSPVRRRRRRPGGRVPKDRPSLTVTPKRWKLRARPSLTVTPRRLGLRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 RPPQKCSTPCGPLRLPPFPSRDSGRLSPDLSVCGQPRDGDELGISASLFSSLASPCPGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RPPQKCSTPCGPLRLPPFPSRDSGRLSPDLSVCGQPRDGDELGISASLFSSLASPCPGSP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 TPRDSVISIGTSACLVAASAVPSGLHLPEVSLDRASLPCSQEEATGGAKDTRMVHQTRAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TPRDSVISIGTSACLVAASAVPSGLHLPEVSLDRASLPCSQEEATGGAKDTRMVHQTRAS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LRSVLFGLMNSGTPEDSEFRADGKNMRESCCKRKLVVGNGPEGPGLSSTGKRRATGQDSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LRSVLFGLMNSGTPEDSEFRADGKNMRESCCKRKLVVGNGPEGPGLSSTGKRRATGQDSC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QERGLQEAVRREHQEASVPKGRIVPRGIDRLERTRSSRKSKHQEATETSLLHSHRFKKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QERGLQEAVRREHQEASVPKGRIVPRGIDRLERTRSSRKSKHQEATETSLLHSHRFKKGQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 KLGKDSFPTQDLTPLQNACFWTKTRASFSFHKKKIVTDVSEVCSIYTTATSLSGSLLSEC
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS11 KLGKDSFPTQDLTPLQNVCFWTKTRASFSFHKKKIVTDVSEVCSIYTTATSLSGSLLSEC
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 SNRPVMNRTSGAPSSWHSSSMYLLSPLNTLSISNKKASDAEKVYGECSQKGPVPFSHCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SNRPVMNRTSGAPSSWHSSSMYLLSPLNTLSISNKKASDAEKVYGECSQKGPVPFSHCLP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 ELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLF
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 IVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKT
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 SLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE3 IYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT
              730       740       750       760       770       780

              790        
pF1KE3 MLNFSSATDLLCQHSLFK
       ::::::::::::::::::
CCDS11 MLNFSSATDLLCQHSLFK
              790        




798 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:41:37 2016 done: Mon Nov  7 16:41:38 2016
 Total Scan time:  4.740 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]