Result of FASTA (ccds) for
pFN21AE3304
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3304, 795 aa
1>>>pF1KE3304 795 - 795 aa - 795 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3881+/-0.00115; mu= 14.1853+/- 0.069
mean_var=70.8136+/-14.580, 0's: 0 Z-trim(102.1): 20 B-trim: 0 in 0/50
Lambda= 0.152411
statistics sampled from 6793 (6798) to 6793 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.209), width: 16
Scan time: 2.830
The best scores are: opt bits E(32554)
CCDS7443.1 ALDH18A1 gene_id:5832|Hs108|chr10 ( 795) 5161 1144.7 0
CCDS31257.1 ALDH18A1 gene_id:5832|Hs108|chr10 ( 793) 5135 1139.0 0
>>CCDS7443.1 ALDH18A1 gene_id:5832|Hs108|chr10 (795 aa)
initn: 5161 init1: 5161 opt: 5161 Z-score: 6127.7 bits: 1144.7 E(32554): 0
Smith-Waterman score: 5161; 100.0% identity (100.0% similar) in 795 aa overlap (1-795:1-795)
10 20 30 40 50 60
pF1KE3 MLSQVYRCGFQPFNQHLLPWVKCTTVFRSHCIQPSVIRHVRSWSNIPFITVPLSRTHGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MLSQVYRCGFQPFNQHLLPWVKCTTVFRSHCIQPSVIRHVRSWSNIPFITVPLSRTHGKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FAHRSELKHAKRIVVKLGSAVVTRGDECGLALGRLASIVEQVSVLQNQGREMMLVTSGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FAHRSELKHAKRIVVKLGSAVVTRGDECGLALGRLASIVEQVSVLQNQGREMMLVTSGAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGVNV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 ISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGTK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 SRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEVKPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEVKPAG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 PTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 PLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 ESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTRE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 EVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 EVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 VRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE3 WNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 WNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSL
730 740 750 760 770 780
790
pF1KE3 KYLHENLPIPQRNTN
:::::::::::::::
CCDS74 KYLHENLPIPQRNTN
790
>>CCDS31257.1 ALDH18A1 gene_id:5832|Hs108|chr10 (793 aa)
initn: 3583 init1: 3583 opt: 5135 Z-score: 6096.8 bits: 1139.0 E(32554): 0
Smith-Waterman score: 5135; 99.7% identity (99.7% similar) in 795 aa overlap (1-795:1-793)
10 20 30 40 50 60
pF1KE3 MLSQVYRCGFQPFNQHLLPWVKCTTVFRSHCIQPSVIRHVRSWSNIPFITVPLSRTHGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MLSQVYRCGFQPFNQHLLPWVKCTTVFRSHCIQPSVIRHVRSWSNIPFITVPLSRTHGKS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 FAHRSELKHAKRIVVKLGSAVVTRGDECGLALGRLASIVEQVSVLQNQGREMMLVTSGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FAHRSELKHAKRIVVKLGSAVVTRGDECGLALGRLASIVEQVSVLQNQGREMMLVTSGAV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 AFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AFGKQRLRHEILLSQSVRQALHSGQNQLKEMAIPVLEARACAAAGQSGLMALYEAMFTQY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SICAAQILVTNLDFHDEQKRRNLNGTLHELLRMNIVPIVNTNDAVVPPAEPNSDLQGV--
190 200 210 220 230
250 260 270 280 290 300
pF1KE3 ISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ISVKDNDSLAARLAVEMKTDLLIVLSDVEGLFDSPPGSDDAKLIDIFYPGDQQSVTFGTK
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 SRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEVKPAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SRVGMGGMEAKVKAALWALQGGTSVVIANGTHPKVSGHVITDIVEGKKVGTFFSEVKPAG
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE3 PTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PTVEQQGEMARSGGRMLATLEPEQRAEIIHHLADLLTDQRDEILLANKKDLEEAEGRLAA
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE3 PLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PLLKRLSLSTSKLNSLAIGLRQIAASSQDSVGRVLRRTRIAKNLELEQVTVPIGVLLVIF
420 430 440 450 460 470
490 500 510 520 530 540
pF1KE3 ESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESRPDCLPQVAALAIASGNGLLLKGGKEAAHSNRILHLLTQEALSIHGVKEAVQLVNTRE
480 490 500 510 520 530
550 560 570 580 590 600
pF1KE3 EVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EVEDLCRLDKMIDLIIPRGSSQLVRDIQKAAKGIPVMGHSEGICHMYVDSEASVDKVTRL
540 550 560 570 580 590
610 620 630 640 650 660
pF1KE3 VRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VRDSKCEYPAACNALETLLIHRDLLRTPLFDQIIDMLRVEQVKIHAGPKFASYLTFSPSE
600 610 620 630 640 650
670 680 690 700 710 720
pF1KE3 VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VKSLRTEYGDLELCIEVVDNVQDAIDHIHKYGSSHTDVIVTEDENTAEFFLQHVDSACVF
660 670 680 690 700 710
730 740 750 760 770 780
pF1KE3 WNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 WNASTRFSDGYRFGLGAEVGISTSRIHARGPVGLEGLLTTKWLLRGKDHVVSDFSEHGSL
720 730 740 750 760 770
790
pF1KE3 KYLHENLPIPQRNTN
:::::::::::::::
CCDS31 KYLHENLPIPQRNTN
780 790
795 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:41:32 2016 done: Sat Nov 5 23:41:33 2016
Total Scan time: 2.830 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]