Result of FASTA (omim) for
pFN21AE3296
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3296, 774 aa
1>>>pF1KE3296 774 - 774 aa - 774 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7926+/-0.000404; mu= 10.5985+/- 0.025
mean_var=187.1240+/-39.465, 0's: 0 Z-trim(117.6): 32 B-trim: 977 in 1/56
Lambda= 0.093758
statistics sampled from 29767 (29799) to 29767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.349), width: 16
Scan time: 12.190
The best scores are: opt bits E(85289)
XP_016878880 (OMIM: 614151) PREDICTED: E3 ubiquiti ( 774) 5202 716.7 8.9e-206
XP_005256078 (OMIM: 614151) PREDICTED: E3 ubiquiti ( 774) 5202 716.7 8.9e-206
XP_011521493 (OMIM: 614151) PREDICTED: E3 ubiquiti ( 774) 5202 716.7 8.9e-206
NP_060594 (OMIM: 614151) E3 ubiquitin-protein liga ( 774) 5202 716.7 8.9e-206
XP_005256079 (OMIM: 614151) PREDICTED: E3 ubiquiti ( 774) 5202 716.7 8.9e-206
XP_016878881 (OMIM: 614151) PREDICTED: E3 ubiquiti ( 715) 3471 482.6 2.5e-135
XP_006721291 (OMIM: 614151) PREDICTED: E3 ubiquiti ( 715) 3471 482.6 2.5e-135
>>XP_016878880 (OMIM: 614151) PREDICTED: E3 ubiquitin-pr (774 aa)
initn: 5202 init1: 5202 opt: 5202 Z-score: 3815.4 bits: 716.7 E(85289): 8.9e-206
Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
XP_016 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
670 680 690 700 710 720
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
730 740 750 760 770
>>XP_005256078 (OMIM: 614151) PREDICTED: E3 ubiquitin-pr (774 aa)
initn: 5202 init1: 5202 opt: 5202 Z-score: 3815.4 bits: 716.7 E(85289): 8.9e-206
Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_005 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
XP_005 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
670 680 690 700 710 720
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
730 740 750 760 770
>>XP_011521493 (OMIM: 614151) PREDICTED: E3 ubiquitin-pr (774 aa)
initn: 5202 init1: 5202 opt: 5202 Z-score: 3815.4 bits: 716.7 E(85289): 8.9e-206
Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_011 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
XP_011 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
670 680 690 700 710 720
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
730 740 750 760 770
>>NP_060594 (OMIM: 614151) E3 ubiquitin-protein ligase R (774 aa)
initn: 5202 init1: 5202 opt: 5202 Z-score: 3815.4 bits: 716.7 E(85289): 8.9e-206
Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
NP_060 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
NP_060 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
670 680 690 700 710 720
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
730 740 750 760 770
>>XP_005256079 (OMIM: 614151) PREDICTED: E3 ubiquitin-pr (774 aa)
initn: 5202 init1: 5202 opt: 5202 Z-score: 3815.4 bits: 716.7 E(85289): 8.9e-206
Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_005 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
XP_005 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
670 680 690 700 710 720
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
730 740 750 760 770
>>XP_016878881 (OMIM: 614151) PREDICTED: E3 ubiquitin-pr (715 aa)
initn: 4789 init1: 3471 opt: 3471 Z-score: 2550.4 bits: 482.6 E(85289): 2.5e-135
Smith-Waterman score: 4675; 92.2% identity (92.4% similar) in 774 aa overlap (1-774:1-715)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_016 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLT---------------
490 500 510 520
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
::::::::::::::::
XP_016 --------------------------------------------RCPLVSLSYMPRAASA
530 540
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
610 620 630 640 650 660
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
670 680 690 700 710
>>XP_006721291 (OMIM: 614151) PREDICTED: E3 ubiquitin-pr (715 aa)
initn: 4789 init1: 3471 opt: 3471 Z-score: 2550.4 bits: 482.6 E(85289): 2.5e-135
Smith-Waterman score: 4675; 92.2% identity (92.4% similar) in 774 aa overlap (1-774:1-715)
10 20 30 40 50 60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
:::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
XP_006 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
:::::::::::::::::::::::::::::::::::::::::::::
XP_006 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLT---------------
490 500 510 520
550 560 570 580 590 600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
::::::::::::::::
XP_006 --------------------------------------------RCPLVSLSYMPRAASA
530 540
610 620 630 640 650 660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
550 560 570 580 590 600
670 680 690 700 710 720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
610 620 630 640 650 660
730 740 750 760 770
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
670 680 690 700 710
774 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 18:05:36 2016 done: Mon Nov 7 18:05:37 2016
Total Scan time: 12.190 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]