FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3296, 774 aa
  1>>>pF1KE3296 774 - 774 aa - 774 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2269+/-0.00101; mu= 7.9537+/- 0.061
 mean_var=167.4030+/-34.655, 0's: 0 Z-trim(110.1): 28  B-trim: 0 in 0/51
 Lambda= 0.099127
 statistics sampled from 11361 (11377) to 11361 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.349), width:  16
 Scan time:  4.380

The best scores are:                                      opt bits E(32554)
CCDS32486.1 RFWD3 gene_id:55159|Hs108|chr16        ( 774) 5202 756.5 3.6e-218


>>CCDS32486.1 RFWD3 gene_id:55159|Hs108|chr16             (774 aa)
 initn: 5202 init1: 5202 opt: 5202  Z-score: 4030.3  bits: 756.5 E(32554): 3.6e-218
Smith-Waterman score: 5202; 99.7% identity (100.0% similar) in 774 aa overlap (1-774:1-774)

               10        20        30        40        50        60
pF1KE3 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAHEAMEYDVQVQLNHAEQQPAPAGMASSQGGPALLQPVPADVVSSQGVPSILQPAPAEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ISSQATPPLLQPAPQLSVDLTEVEVLGEDNVENINPRTSEQHRQGSDGNHTIPASSLHSM
       :::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::
CCDS32 ISSQATPPLLQPAPQLSVDLTEVEVLGEDTVENINPRTSEQHRQGSDGNHTIPASSLHSM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TNFISGLQRLHGMLEFLRPSSSNHSVGPMRTRRRVSASRRARAGGSQRTDSARLRAPLDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YFQVSRTQPDLPATTYDSETRNPVSEELQVSSSSDSDSDSSAEYGGVVDQAEESGAVILE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EQLAGVSAEQEVTCIDGGKTLPKQPSPQKSEPLLPSASMDEEEGDTCTICLEQWTNAGDH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RLSALRCGHLFGYRCISTWLKGQVRKCPQCNKKARHSDIVVLYARTLRALDTSEQERMKS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SLLKEQMLRKQAELESAQCRLQLQVLTDKCTRLQRRVQDLQKLTSHQSQNLQQPRGSQAW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLSCSPSSQGQHKHKYHFQKTFTVSQAGNCRIMAYCDALSCLVISQPSPQASFLPGFGVK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MLSTANMKSSQYIPMHGKQIRGLAFSSYLRGLLLSASLDNTIKLTSLETNTVVQTYNAGR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 PVWSCCWCLDEANYIYAGLANGSVLVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
       :::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS32 PVWSCCWCLDEANYIYAGLANGSILVYDVRNTSSHVQELVAQKARCPLVSLSYMPRAASA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AFPYGGVLAGTLEDASFWEQKMDFSHWPHVLPLEPGGCIDFQTENSSRHCLVTYRPDKNH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TTIRSVLMEMSYRLDDTGNPICSCQPVHTFFGGPTCKLLTKNAIFQSPENDGNILVCTGD
              670       680       690       700       710       720

              730       740       750       760       770    
pF1KE3 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EAANSALLWDAASGSLLQDLQTDQPVLDICPFEVNRNSYLATLTEKMVHIYKWE
              730       740       750       760       770    




774 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:05:35 2016 done: Mon Nov  7 18:05:35 2016
 Total Scan time:  4.380 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]