FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3286, 733 aa
  1>>>pF1KE3286 733 - 733 aa - 733 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7477+/-0.00119; mu= 5.5224+/- 0.072
 mean_var=190.8299+/-38.527, 0's: 0 Z-trim(108.6): 32  B-trim: 2 in 1/50
 Lambda= 0.092843
 statistics sampled from 10313 (10335) to 10313 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.317), width:  16
 Scan time:  3.900

The best scores are:                                      opt bits E(32554)
CCDS1366.1 TRMT1L gene_id:81627|Hs108|chr1         ( 733) 4885 667.4 2.2e-191


>>CCDS1366.1 TRMT1L gene_id:81627|Hs108|chr1              (733 aa)
 initn: 4885 init1: 4885 opt: 4885  Z-score: 3549.4  bits: 667.4 E(32554): 2.2e-191
Smith-Waterman score: 4885; 100.0% identity (100.0% similar) in 733 aa overlap (1-733:1-733)

               10        20        30        40        50        60
pF1KE3 MENMAEEELLPLEKEEVEVAQVQVPTPARDSAGVPAPAPDSALDSAPTPASAPAPAPALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MENMAEEELLPLEKEEVEVAQVQVPTPARDSAGVPAPAPDSALDSAPTPASAPAPAPALA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QAPALSPSLASAPEEAKSKRHISIQRQLADLENLAFVTDGNFDSASSLNSDNLDAGNRQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QAPALSPSLASAPEEAKSKRHISIQRQLADLENLAFVTDGNFDSASSLNSDNLDAGNRQA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 CPLCPKEKFRACNSHKLRRHLQNLHWKVSVEFEGYRMCICHLPCRPVKPNIIGEQITSKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CPLCPKEKFRACNSHKLRRHLQNLHWKVSVEFEGYRMCICHLPCRPVKPNIIGEQITSKM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GAHYHCIICSATITRRTDMLGHVRRHMNKGETKSSYIAASTAKPPKEILKEADTDVQVCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GAHYHCIICSATITRRTDMLGHVRRHMNKGETKSSYIAASTAKPPKEILKEADTDVQVCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 NYSIPQKTDSYFNPKMKLNRQLIFCTLAALAEERKPLECLDAFGATGIMGLQWAKHLGNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NYSIPQKTDSYFNPKMKLNRQLIFCTLAALAEERKPLECLDAFGATGIMGLQWAKHLGNA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 VKVTINDLNENSVTLIQENCHLNKLKVVVDSKEKEKSDDILEEGEKNLGNIKVTKMDANV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VKVTINDLNENSVTLIQENCHLNKLKVVVDSKEKEKSDDILEEGEKNLGNIKVTKMDANV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LMHLRSFDFIHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYAKAQHVARRHYGCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LMHLRSFDFIHLDPFGTSVNYLDSAFRNIRNLGIVSVTSTDISSLYAKAQHVARRHYGCN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 IVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPTSADETAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IVRTEYYKELAARIVVAAVARAAARCNKGIEVLFAVALEHFVLVVVRVLRGPTSADETAK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 KIQYLIHCQWCEERIFQKDGNMVEENPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KIQYLIHCQWCEERIFQKDGNMVEENPYRQLPCNCHGSMPGKTAIELGPLWSSSLFNTGF
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 LKRMLFESLHHGLDDIQTLIKTLIFESECTPQSQFSIHASSNVNKQEENGVFIKTTDDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKRMLFESLHHGLDDIQTLIKTLIFESECTPQSQFSIHASSNVNKQEENGVFIKTTDDTT
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 TDNYIAQGKRKSNEMITNLGKKQKTDVSTEHPPFYYNIHRHSIKGMNMPKLKKFLCYLSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TDNYIAQGKRKSNEMITNLGKKQKTDVSTEHPPFYYNIHRHSIKGMNMPKLKKFLCYLSQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE3 AGFRVSRTHFDPMGVRTDAPLMQFKSILLKYSTPTYTGGQSESHVQSASEDTVTERVEMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGFRVSRTHFDPMGVRTDAPLMQFKSILLKYSTPTYTGGQSESHVQSASEDTVTERVEMS
              670       680       690       700       710       720

              730   
pF1KE3 VNDKAEASGCRRW
       :::::::::::::
CCDS13 VNDKAEASGCRRW
              730   




733 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:48:05 2016 done: Mon Nov  7 03:48:06 2016
 Total Scan time:  3.900 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]