FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3278, 696 aa
  1>>>pF1KE3278 696 - 696 aa - 696 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6647+/-0.00124; mu= 17.7273+/- 0.074
 mean_var=71.7180+/-14.405, 0's: 0 Z-trim(101.8): 35  B-trim: 276 in 1/49
 Lambda= 0.151447
 statistics sampled from 6674 (6680) to 6674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.205), width:  16
 Scan time:  3.510

The best scores are:                                      opt bits E(32554)
CCDS1340.1 XPR1 gene_id:9213|Hs108|chr1            ( 696) 4670 1030.4       0
CCDS44284.1 XPR1 gene_id:9213|Hs108|chr1           ( 631) 2907 645.2 8.7e-185


>>CCDS1340.1 XPR1 gene_id:9213|Hs108|chr1                 (696 aa)
 initn: 4670 init1: 4670 opt: 4670  Z-score: 5512.1  bits: 1030.4 E(32554):    0
Smith-Waterman score: 4670; 100.0% identity (100.0% similar) in 696 aa overlap (1-696:1-696)

               10        20        30        40        50        60
pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE3 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
              610       620       630       640       650       660

              670       680       690      
pF1KE3 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
       ::::::::::::::::::::::::::::::::::::
CCDS13 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
              670       680       690      

>>CCDS44284.1 XPR1 gene_id:9213|Hs108|chr1                (631 aa)
 initn: 2907 init1: 2907 opt: 2907  Z-score: 3431.0  bits: 645.2 E(32554): 8.7e-185
Smith-Waterman score: 4079; 90.7% identity (90.7% similar) in 696 aa overlap (1-696:1-631)

               10        20        30        40        50        60
pF1KE3 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MKFAEHLSAHITPEWRKQYIQYEAFKDMLYSAQDQAPSVEVTDEDTVKRYFAKFEEKFFQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TCEKELAKINTFYSEKLAEAQRRFATLQNELQSSLDAQKESTGVTTLRQRRKPVFHLSHE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ERVQHRNIKDLKLAFSEFYLSLILLQNYQNLNFTGFRKILKKHDKILETSRGADWRVAHV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EVAPFYTCKKINQLISETEAVVTNELEDGDRQKAMKRLRVPPLGAAQPAPAWTTFRVGLF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CGIFIVLNITLVLAAVFKLETDRSIWPLIRIYRGGFLLIEFLFLLGINTYGWRQAGVNHV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LIFELNPRSNLSHQHLFEIAGFLGILWCLSLLACFFAPISVIPTYVYPLALYGFMVFFLI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NPTKTFYYKSRFWLLKLLFRVFTAPFHKVGFADFWLADQLNSLSVILMDLEYMICFYSLE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 LKWDESKGLLPNNSEESGICHKYTYGVRAIVQCIPAWLRFIQCLRRYRDTKRAFPHLVNA
       ::::::::::::::::                                            
CCDS44 LKWDESKGLLPNNSEE--------------------------------------------
              430                                                  

              490       500       510       520       530       540
pF1KE3 GKYSTTFFMVTFAALYSTHKERGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
                            :::::::::::::::::::::::::::::::::::::::
CCDS44 ---------------------RGHSDTMVFFYLWIVFYIISSCYTLIWDLKMDWGLFDKN
                             440       450       460       470     

              550       560       570       580       590       600
pF1KE3 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AGENTFLREEIVYPQKAYYYCAIIEDVILRFAWTIQISITSTTLLPHSGDIIATVFAPLE
         480       490       500       510       520       530     

              610       620       630       640       650       660
pF1KE3 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VFRRFVWNFFRLENEHLNNCGEFRAVRDISVAPLNADDQTLLEQMMDQDDGVRNRQKNRS
         540       550       560       570       580       590     

              670       680       690      
pF1KE3 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
       ::::::::::::::::::::::::::::::::::::
CCDS44 WKYNQSISLRRPRLASQSKARDTKVLIEDTDDEANT
         600       610       620       630 




696 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:46:20 2016 done: Sun Nov  6 18:46:20 2016
 Total Scan time:  3.510 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]