FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3263, 634 aa
  1>>>pF1KE3263 634 - 634 aa - 634 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0580+/-0.00118; mu= 12.6307+/- 0.071
 mean_var=151.8462+/-29.581, 0's: 0 Z-trim(106.9): 28  B-trim: 0 in 0/52
 Lambda= 0.104081
 statistics sampled from 9247 (9256) to 9247 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.284), width:  16
 Scan time:  3.730

The best scores are:                                      opt bits E(32554)
CCDS31132.1 GTPBP4 gene_id:23560|Hs108|chr10       ( 634) 4166 638.1 1.1e-182


>>CCDS31132.1 GTPBP4 gene_id:23560|Hs108|chr10            (634 aa)
 initn: 4166 init1: 4166 opt: 4166  Z-score: 3393.4  bits: 638.1 E(32554): 1.1e-182
Smith-Waterman score: 4166; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634)

               10        20        30        40        50        60
pF1KE3 MAHYNFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAHYNFKKITVVPSAKDFIDLTLSKTQRKTPTVIHKHYQIHRIRHFYMRKVKFTQQNYHD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RLSQILTDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVDNVAKDYVRLMKYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RLSQILTDFPKLDDIHPFYADLMNILYDKDHYKLALGQINIAKNLVDNVAKDYVRLMKYG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DSLYRCKQLKRAALGRMCTVIKRQKQSLEYLEQVRQHLSRLPTIDPNTRTLLLCGYPNVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DSLYRCKQLKRAALGRMCTVIKRQKQSLEYLEQVRQHLSRLPTIDPNTRTLLLCGYPNVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 KSSFINKVTRADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPGILDHPLEDRNTIEMQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KSSFINKVTRADVDVQPYAFTTKSLFVGHMDYKYLRWQVVDTPGILDHPLEDRNTIEMQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 ITALAHLRAAVLYVMDLSEQCGHGLREQLELFQNIRPLFINKPLIVVANKCDVKRIAELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ITALAHLRAAVLYVMDLSEQCGHGLREQLELFQNIRPLFINKPLIVVANKCDVKRIAELS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 EDDQKIFTDLQSEGFPVIETSTLTEEGVIKVKTEACDRLLAHRVETKMKGNKVNEVLNRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDDQKIFTDLQSEGFPVIETSTLTEEGVIKVKTEACDRLLAHRVETKMKGNKVNEVLNRL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 HLAIPTRRDDKERPPFIPEGVVARRKRMETEESRKKRERDLELEMGDDYILDLQKYWDLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HLAIPTRRDDKERPPFIPEGVVARRKRMETEESRKKRERDLELEMGDDYILDLQKYWDLM
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 NLSEKHDKIPEIWEGHNIADYIDPAIMKKLEELEKEEELRTAAGEYDSVSESEDEEMLEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 NLSEKHDKIPEIWEGHNIADYIDPAIMKKLEELEKEEELRTAAGEYDSVSESEDEEMLEI
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 RQLAKQIREKKKLKILESKEKNTQGPRMPRTAKKVQRTVLEKEMRSLGVDMDDKDDAHYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RQLAKQIREKKKLKILESKEKNTQGPRMPRTAKKVQRTVLEKEMRSLGVDMDDKDDAHYA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 VQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSGLRDVKMVKKAKTMMKNAQKKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VQARRSRSITRKRKREDSAPPSSVARSGSCSRTPRDVSGLRDVKMVKKAKTMMKNAQKKM
              550       560       570       580       590       600

              610       620       630    
pF1KE3 NRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR
       ::::::::::::::::::::::::::::::::::
CCDS31 NRLGKKGEADRHVFDMKPKHLLSGKRKAGKKDRR
              610       620       630    




634 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:29:16 2016 done: Sat Nov  5 22:29:17 2016
 Total Scan time:  3.730 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]