FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3258, 617 aa
  1>>>pF1KE3258 617 - 617 aa - 617 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8674+/-0.000422; mu= 13.0466+/- 0.026
 mean_var=145.5172+/-29.408, 0's: 0 Z-trim(116.1): 8  B-trim: 1088 in 2/52
 Lambda= 0.106321
 statistics sampled from 27077 (27080) to 27077 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.683), E-opt: 0.2 (0.318), width:  16
 Scan time:  7.650

The best scores are:                                      opt bits E(85289)
NP_003460 (OMIM: 118930) secretogranin-2 precursor ( 617) 4068 636.2 9.6e-182


>>NP_003460 (OMIM: 118930) secretogranin-2 precursor [Ho  (617 aa)
 initn: 4068 init1: 4068 opt: 4068  Z-score: 3383.8  bits: 636.2 E(85289): 9.6e-182
Smith-Waterman score: 4068; 99.5% identity (99.5% similar) in 617 aa overlap (1-617:1-617)

               10        20        30        40        50        60
pF1KE3 MAEAKTHWLGAALSLIPLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAEAKTHWLGAALSLIPLIFLISGAEAASFQRNQLLQKEPDLRLENVQKFPSPEMIRALE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YIENLRQQAHKEESSPDYNPYQGVSVPLQQKENGDESHLPERDSLSEEDWMRIILEALRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YIENLRQQAHKEESSPDYNPYQGVSVPLQQKENGDESHLPERDSLSEEDWMRIILEALRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AENEPQSAPKENKPYALNSEKNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AENEPQSAPKENKPYALNSEKNFPMDMSDDYETQQWPERKLKHMQFPPMYEENSRDNPFK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 RTNEIVEEQYTPQSLATLESVFQELGKLTGPNNQKRERMDEEQKLYTDDEDDIYKANNIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RTNEIVEEQYTPQSLATLESVFQELGKLTGPNNQKRERMDEEQKLYTDDEDDIYKANNIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 YEDVVGGEDWNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEEGLRKESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_003 YEDVVGGEDWNPVEEKIESQTQEEVRDSKENIEKNEQINDEMKRSGQLGIQEEDLRKESK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 DQLSDDVSKVIAYLKRLVNAAGSGRLQNGQNGERATRLFEKPLDSQSIYQLIEISRNLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DQLSDDVSKVIAYLKRLVNAAGSGRLQNGQNGERATRLFEKPLDSQSIYQLIEISRNLQI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 PPEDLIEMLKTGEKPNGSVEPERELDLPVDLDDISEADLDHPDLFQNRMLSKSGYPKTPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PPEDLIEMLKTGEKPNGSVEPERELDLPVDLDDISEADLDHPDLFQNRMLSKSGYPKTPG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 GAGTEALPDGLSVEDILNLLGMESAANQKTSYFPNPYNQEKVLPRLPYGAGRSRSNQLPK
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RAGTEALPDGLSVEDILNLLGMESAANQKTSYFPNPYNQEKVLPRLPYGAGRSRSNQLPK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 AAWIPHVENRQMAYENLNDKDQELGEYLARMLVKYPEIINSNQVKRVPGQGSSEGDLQEE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_003 AAWIPHVENRQMAYENLNDKDQELGEYLARMLVKYPEIINSNQVKRVPGQGSSEDDLQEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE3 EQIEQAIKEHLNQGSSQETDKLAPVSKRFPVGPPKNDDTPNRQYWDEDLLMKVLEYLNQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EQIEQAIKEHLNQGSSQETDKLAPVSKRFPVGPPKNDDTPNRQYWDEDLLMKVLEYLNQE
              550       560       570       580       590       600

              610       
pF1KE3 KAEKGREHIAKRAMENM
       :::::::::::::::::
NP_003 KAEKGREHIAKRAMENM
              610       




617 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:55:39 2016 done: Mon Nov  7 18:55:40 2016
 Total Scan time:  7.650 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]