FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3252, 588 aa
  1>>>pF1KE3252 588 - 588 aa - 588 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7376+/-0.00105; mu= 18.2081+/- 0.064
 mean_var=95.5812+/-19.140, 0's: 0 Z-trim(105.5): 37  B-trim: 17 in 1/49
 Lambda= 0.131186
 statistics sampled from 8443 (8468) to 8443 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.26), width:  16
 Scan time:  2.960

The best scores are:                                      opt bits E(32554)
CCDS5452.1 NME8 gene_id:51314|Hs108|chr7           ( 588) 3815 732.8 2.8e-211
CCDS4197.1 NME5 gene_id:8382|Hs108|chr5            ( 212)  305 68.2 1.2e-11


>>CCDS5452.1 NME8 gene_id:51314|Hs108|chr7                (588 aa)
 initn: 3815 init1: 3815 opt: 3815  Z-score: 3906.6  bits: 732.8 E(32554): 2.8e-211
Smith-Waterman score: 3815; 99.7% identity (99.7% similar) in 588 aa overlap (1-588:1-588)

               10        20        30        40        50        60
pF1KE3 MASKKREVQLQTVINNQSLWDEMLQNKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MASKKREVQLQTVINNQSLWDEMLQNKGLTVIDVYQAWCGPCRAMQPLFRKLKNELNEDE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 ILHFAVAEADNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLIDEERKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILHFAVAEADNIVTLQPFRDKCEPVFLFSVNGKIIEKIQGANAPLVNKKVINLIDEERKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 AAGEMARPQYPEIPLVDSDSEVSEESPCESVQELYSIAIIKPDAVISKKVLEIKRKITKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AAGEMARPQYPEIPLVDSDSEVSEESPCESVQELYSIAIIKPDAVISKKVLEIKRKITKA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 GFIIEAEHKTVLTEEQVVNFYSRIADQRDFEEFVSFMTSGLSYILVVSQGSKHNPPSEET
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS54 GFIIEAEHKTVLTEEQVVNFYSRIADQCDFEEFVSFMTSGLSYILVVSQGSKHNPPSEET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 EPQTDTEPNERSEDQPEVEAQVTPGMMKNKQDSLQEYLERQHLAQLCDIEEDAANVAKFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EPQTDTEPNERSEDQPEVEAQVTPGMMKNKQDSLQEYLERQHLAQLCDIEEDAANVAKFM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 DAFFPDFKKMKSMKLEKTLALLRPNLFHERKDDVLRIIKDEDFKILEQRQVVLSEKEAQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DAFFPDFKKMKSMKLEKTLALLRPNLFHERKDDVLRIIKDEDFKILEQRQVVLSEKEAQA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LCKEYENEDYFNKLIENMTSGPSLALVLLRDNGLQYWKQLLGPRTVEEAIEYFPESLCAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LCKEYENEDYFNKLIENMTSGPSLALVLLRDNGLQYWKQLLGPRTVEEAIEYFPESLCAQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 FAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLGLIKPHATSEQREQILKIVKEAGFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLGLIKPHATSEQREQILKIVKEAGFDL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 TQVKKMFLTPEQTEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMGPTD
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TQVKKMFLTPEQIEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMGPTD
              490       500       510       520       530       540

              550       560       570       580        
pF1KE3 PEEAKLLSPDSIRAQFGISKLKNIVHGASNAYEAKEVVNRLFEDPEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PEEAKLLSPDSIRAQFGISKLKNIVHGASNAYEAKEVVNRLFEDPEEN
              550       560       570       580        

>>CCDS4197.1 NME5 gene_id:8382|Hs108|chr5                 (212 aa)
 initn: 525 init1: 252 opt: 305  Z-score: 322.4  bits: 68.2 E(32554): 1.2e-11
Smith-Waterman score: 305; 38.0% identity (68.6% similar) in 137 aa overlap (450-586:12-145)

     420       430       440       450       460       470         
pF1KE3 QFAMDSLPVNQLYGSDSLETAEREIQHFFPLQSTLGLIKPHATSEQREQILKIVKEAGFD
                                     ...::..:::  . ...:.:  :. ..:: 
CCDS41                    MEISMPPPQIYVEKTLAIIKPDIV-DKEEEIQDIILRSGFT
                                  10        20         30        40

     480       490       500       510       520       530         
pF1KE3 LTQVKKMFLTPEQTEKIYPKVTGKDFYKDLLEMLSVGPSMVMILTKWNAVAEWRRLMGPT
       ..: .:. :.:::  ..: .  :: :. .:  ..: :: ..:::.. .:.. : .:.::.
CCDS41 IVQRRKLRLSPEQCSNFYVEKYGKMFFPNLTAYMSSGPLVAMILARHKAISYWLELLGPN
               50        60        70        80        90       100

     540       550       560       570       580                   
pF1KE3 DPEEAKLLSPDSIRAQFGISKLKNIVHGASNAYEAKEVVNRLFEDPEEN           
       .   ::   :::.:: .: . :.: .:: :: . : :   : :  ::             
CCDS41 NSLVAKETHPDSLRAIYGTDDLRNALHG-SNDFAAAEREIR-FMFPEVIVEPIPIGQAAK
              110       120        130       140        150        

CCDS41 DYLNLHIMPTLLEGLTELCKQKPADPLIWLADWLLKNNPNKPKLCHHPIVEEPY
      160       170       180       190       200       210  




588 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:48:57 2016 done: Mon Nov  7 18:48:57 2016
 Total Scan time:  2.960 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]