FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3245, 568 aa
  1>>>pF1KE3245 568 - 568 aa - 568 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5084+/-0.00116; mu= 9.4504+/- 0.070
 mean_var=140.8043+/-27.744, 0's: 0 Z-trim(106.8): 26  B-trim: 380 in 1/50
 Lambda= 0.108085
 statistics sampled from 9202 (9210) to 9202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.283), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(32554)
CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6          ( 568) 3743 595.7 4.9e-170
CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18         ( 519)  720 124.3 3.7e-28


>>CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6               (568 aa)
 initn: 3743 init1: 3743 opt: 3743  Z-score: 3166.1  bits: 595.7 E(32554): 4.9e-170
Smith-Waterman score: 3743; 100.0% identity (100.0% similar) in 568 aa overlap (1-568:1-568)

               10        20        30        40        50        60
pF1KE3 MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKEKDDILFEDLQDNVNENGEGEIEDEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKEKDDILFEDLQDNVNENGEGEIEDEEE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 EGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQANRQTSDSSSAKMSTPADKVLRKFENKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQANRQTSDSSSAKMSTPADKVLRKFENKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NLDKLNVTDSVINKVTEKSRQKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NLDKLNVTDSVINKVTEKSRQKEADMYRIKDKADRATVEQVLDPRTRMILFKMLTRGIIT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 EINGCISTGKEANVYHASTANGESRAIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EINGCISTGKEANVYHASTANGESRAIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 KMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KMVKTWAEKEMRNLIRLNTAEIPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 RELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RELYLQVIQYMRRMYQDARLVHADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 CANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CANVNDFFMRHSVAVMTVRELFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 DEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 DEEVFKRAYIPRTLNEVKNYERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 KVPALLENQVEERTCSDSEDIGSSECSDTDSEEQGDHARPKKHTTDPDIDKKERKKMVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KVPALLENQVEERTCSDSEDIGSSECSDTDSEEQGDHARPKKHTTDPDIDKKERKKMVKE
              490       500       510       520       530       540

              550       560        
pF1KE3 AQREKRKNKIPKHVKKRKEKTAKTKKGK
       ::::::::::::::::::::::::::::
CCDS45 AQREKRKNKIPKHVKKRKEKTAKTKKGK
              550       560        

>>CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18              (519 aa)
 initn: 872 init1: 673 opt: 720  Z-score: 619.1  bits: 124.3 E(32554): 3.7e-28
Smith-Waterman score: 929; 35.6% identity (69.4% similar) in 438 aa overlap (6-428:78-504)

                                        10        20        30     
pF1KE3                          MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKE-
                                     :......  ..:   ... . .. :   . 
CCDS11 QLEEEAAVFPEVAVAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDS
        50        60        70        80        90       100       

           40        50        60        70        80        90    
pF1KE3 KDDILFEDLQDNVNENGEGEIEDEEEEGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQAN
       : .: ::. . .:.   ...  ..: .  :  :: .   . :    ::.. .: .    .
CCDS11 KVSISFENYR-KVHPYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKH
       110        120       130       140       150       160      

            100       110       120       130       140       150  
pF1KE3 RQT--SDSSSAKMSTPADKVLRKFENKINLDKLNVTDSVINKVTEKSRQKEADMYRIKDK
        ..  . ...:.: . : .   .  . :..: :.... :.: . ... ..:    :...:
CCDS11 DEVVCGRKNTARMENFAPEF--QVGDGIGMD-LKLSNHVFNALKQHAYSEERRSARLHEK
        170       180         190        200       210       220   

            160       170       180       190       200            
pF1KE3 ADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESR-------
        ...:.:...::.::....::.. :..  :.::::::::. :.::  .. :..       
CCDS11 KEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVI
           230       240       250       260       270       280   

             210       220       230       240       250       260 
pF1KE3 ----AIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAE
           :::..::..  ::.::::.. .:::.  . : ::::... ::::::.:: :.. : 
CCDS11 PTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAG
           290       300       310       320       330       340   

             270       280       290       300       310       320 
pF1KE3 IPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLV
       ::::  ..:..:.:::::::.:..::: ::.:.:.  . .: : :... ::..:..  ::
CCDS11 IPCPTVVLLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLV
           350       360       370       380       390       400   

             330       340       350       360       370        380
pF1KE3 HADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKDCANVNDFFMRHSVA-VMTVRE
       ::::::.:::.:.: :..::::::::  :::.:::: .:: ::..::.. .:  ... ::
CCDS11 HADLSEYNMLWHAGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERE
           410       420       430       440       450       460   

              390       400       410       420       430       440
pF1KE3 LFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHVDEEVFKRAYIPRTLNEVKNY
       ::. :.  .:: .:   .:..   .       :. ..:::...  : :            
CCDS11 LFNAVSGLNITADNEADFLAEIEAL-------EKMNEDHVQKNGRKAASFLKDDGDPPLL
           470       480              490       500       510      

              450       460       470       480       490       500
pF1KE3 ERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQKVPALLENQVEERTCSDSED
                                                                   
CCDS11 YDE                                                         
                                                                   




568 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 17:00:23 2016 done: Sun Nov  6 17:00:24 2016
 Total Scan time:  3.470 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]