FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3239, 559 aa
  1>>>pF1KE3239 559 - 559 aa - 559 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7661+/-0.0011; mu= -0.3016+/- 0.067
 mean_var=493.7891+/-100.591, 0's: 0 Z-trim(116.4): 11  B-trim: 0 in 0/54
 Lambda= 0.057717
 statistics sampled from 17028 (17035) to 17028 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.523), width:  16
 Scan time:  4.070

The best scores are:                                      opt bits E(32554)
CCDS6613.2 DCAF10 gene_id:79269|Hs108|chr9         ( 559) 3878 337.3   3e-92
CCDS75835.1 DCAF10 gene_id:79269|Hs108|chr9        ( 386) 2575 228.6 1.1e-59


>>CCDS6613.2 DCAF10 gene_id:79269|Hs108|chr9              (559 aa)
 initn: 3878 init1: 3878 opt: 3878  Z-score: 1769.7  bits: 337.3 E(32554): 3e-92
Smith-Waterman score: 3878; 100.0% identity (100.0% similar) in 559 aa overlap (1-559:1-559)

               10        20        30        40        50        60
pF1KE3 MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MFPFGPHSPGGDGSAGAGAEEPTPHEGQAAATGPPSPLHPGADATHPPPPARSPRRPGAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SLSPAPRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRHGLGAGLGGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SLSPAPRSGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCRAKSRGRHGLGAGLGGPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 ARLFGWLKERSLGRGLFVDPARDNFRTMTSLYGSIHPADSVYLSTRTHGAVFNLEYSPDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ARLFGWLKERSLGRGLFVDPARDNFRTMTSLYGSIHPADSVYLSTRTHGAVFNLEYSPDG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SVLTVACEQTEVLLFDPISSKHIKTLSEAHEDCVNNIRFLDNRLFATCSDDTTIALWDLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 KLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRYTEDGCPHKKFFHTRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KLNTKVCTLHGHTSWVKNIEYDTNTRLLVTSGFDGNVIIWDTNRYTEDGCPHKKFFHTRF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LMRMRLTPDCSKMLISTSSGYLLILHDLDLTKSLEVGSYPILRARRTTSSSDLTTSSSSS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 GPRVSGSPCHHSDSNSSEKHMSRASQREGVSPRNSLEVVTPEVLGESDHGNCITSLQLHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GPRVSGSPCHHSDSNSSEKHMSRASQREGVSPRNSLEVVTPEVLGESDHGNCITSLQLHP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 KGWATLLRCSSNSDDEECTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 KGWATLLRCSSNSDDEECTCVYEFQEGAPVRPVSPRCSLRLTHYIEEANVGRGYIKELCF
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 SPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SPDGRMISSPHGYGIRLLGFDKQCSELVDCLPKEASPLRVIRSLYSHNDVVLTTKFSPTH
              490       500       510       520       530       540

              550         
pF1KE3 CQIASGCLSGRVSLYQPKF
       :::::::::::::::::::
CCDS66 CQIASGCLSGRVSLYQPKF
              550         

>>CCDS75835.1 DCAF10 gene_id:79269|Hs108|chr9             (386 aa)
 initn: 2575 init1: 2575 opt: 2575  Z-score: 1185.1  bits: 228.6 E(32554): 1.1e-59
Smith-Waterman score: 2575; 100.0% identity (100.0% similar) in 379 aa overlap (181-559:8-386)

              160       170       180       190       200       210
pF1KE3 LYGSIHPADSVYLSTRTHGAVFNLEYSPDGSVLTVACEQTEVLLFDPISSKHIKTLSEAH
                                     ::::::::::::::::::::::::::::::
CCDS75                        MLSRSHRSVLTVACEQTEVLLFDPISSKHIKTLSEAH
                                      10        20        30       

              220       230       240       250       260       270
pF1KE3 EDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EDCVNNIRFLDNRLFATCSDDTTIALWDLRKLNTKVCTLHGHTSWVKNIEYDTNTRLLVT
        40        50        60        70        80        90       

              280       290       300       310       320       330
pF1KE3 SGFDGNVIIWDTNRYTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SGFDGNVIIWDTNRYTEDGCPHKKFFHTRFLMRMRLTPDCSKMLISTSSGYLLILHDLDL
       100       110       120       130       140       150       

              340       350       360       370       380       390
pF1KE3 TKSLEVGSYPILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSEKHMSRASQREGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 TKSLEVGSYPILRARRTTSSSDLTTSSSSSGPRVSGSPCHHSDSNSSEKHMSRASQREGV
       160       170       180       190       200       210       

              400       410       420       430       440       450
pF1KE3 SPRNSLEVVTPEVLGESDHGNCITSLQLHPKGWATLLRCSSNSDDEECTCVYEFQEGAPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SPRNSLEVVTPEVLGESDHGNCITSLQLHPKGWATLLRCSSNSDDEECTCVYEFQEGAPV
       220       230       240       250       260       270       

              460       470       480       490       500       510
pF1KE3 RPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RPVSPRCSLRLTHYIEEANVGRGYIKELCFSPDGRMISSPHGYGIRLLGFDKQCSELVDC
       280       290       300       310       320       330       

              520       530       540       550         
pF1KE3 LPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPKEASPLRVIRSLYSHNDVVLTTKFSPTHCQIASGCLSGRVSLYQPKF
       340       350       360       370       380      




559 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:56:10 2016 done: Sun Nov  6 05:56:11 2016
 Total Scan time:  4.070 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]