FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3234, 546 aa
  1>>>pF1KE3234 546 - 546 aa - 546 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1724+/-0.000896; mu= 15.0685+/- 0.054
 mean_var=117.6067+/-24.029, 0's: 0 Z-trim(109.5): 118  B-trim: 15 in 1/49
 Lambda= 0.118266
 statistics sampled from 10770 (10910) to 10770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.335), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS9610.1 DCAF11 gene_id:80344|Hs108|chr14        ( 546) 3747 650.7 1.3e-186
CCDS41929.1 DCAF11 gene_id:80344|Hs108|chr14       ( 520) 3306 575.4 5.5e-164


>>CCDS9610.1 DCAF11 gene_id:80344|Hs108|chr14             (546 aa)
 initn: 3747 init1: 3747 opt: 3747  Z-score: 3463.9  bits: 650.7 E(32554): 1.3e-186
Smith-Waterman score: 3747; 99.8% identity (100.0% similar) in 546 aa overlap (1-546:1-546)

               10        20        30        40        50        60
pF1KE3 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 GGAANLQFIQALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GGAANLQFIQALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 SKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS96 SKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE3 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS96 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST
              490       500       510       520       530       540

             
pF1KE3 PFSSPQ
       ::::::
CCDS96 PFSSPQ
             

>>CCDS41929.1 DCAF11 gene_id:80344|Hs108|chr14            (520 aa)
 initn: 3306 init1: 3306 opt: 3306  Z-score: 3057.5  bits: 575.4 E(32554): 5.5e-164
Smith-Waterman score: 3521; 95.1% identity (95.2% similar) in 546 aa overlap (1-546:1-520)

               10        20        30        40        50        60
pF1KE3 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQVLAYLLRRGQVRLVQG
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS41 MGSRNSSSAGSGSGDPSEGLPRRGAGLRRSEEEEEEDEDVDLAQ----------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KE3 GGAANLQFIQALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ----------ALLDSEEENDRAWDGRLGDRYNPPVDATPDTRELEFNEIKTQVELATGQL
                     50        60        70        80        90    

              130       140       150       160       170       180
pF1KE3 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 GLRRAAQKHSFPRMLHQRERGLCHRGSFSLGEQSRVISHFLPNDLGFTDSYSQKAFCGIY
          100       110       120       130       140       150    

              190       200       210       220       230       240
pF1KE3 SKDGQIFMSACQDQTIRLYDCRYGRFHKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD
       ::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::
CCDS41 SKDGQIFMSACQDQTIRLYDCRYGRFRKFKSIKARDVGWSVLDVAFTPDGNHFLYSSWSD
          160       170       180       190       200       210    

              250       260       270       280       290       300
pF1KE3 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 YIHICNIYGEGDTHTALDLRPDERRFAVFSIAVSSDGREVLGGANDGCLYVFDREQNRRT
          220       230       240       250       260       270    

              310       320       330       340       350       360
pF1KE3 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQIESHEDDVNAVAFADISSQILFSGGDDAICKVWDRRTMREDDPKPVGALAGHQDGITF
          280       290       300       310       320       330    

              370       380       390       400       410       420
pF1KE3 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IDSKGDARYLISNSKDQTIKLWDIRRFSSREGMEASRQAATQQNWDYRWQQVPKKAWRKL
          340       350       360       370       380       390    

              430       440       450       460       470       480
pF1KE3 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLT
          400       410       420       430       440       450    

              490       500       510       520       530       540
pF1KE3 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NHKACVRDVSWHPFEEKIVSSSWDGNLRLWQYRQAEYFQDDMPESEECASAPAPVPQSST
          460       470       480       490       500       510    

             
pF1KE3 PFSSPQ
       ::::::
CCDS41 PFSSPQ
          520




546 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 14:29:16 2016 done: Sun Nov  6 14:29:16 2016
 Total Scan time:  3.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]