FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3231, 539 aa
  1>>>pF1KE3231 539 - 539 aa - 539 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.8668+/-0.000833; mu= 9.5796+/- 0.050
 mean_var=202.9287+/-40.742, 0's: 0 Z-trim(114.8): 8  B-trim: 3 in 1/51
 Lambda= 0.090033
 statistics sampled from 15342 (15350) to 15342 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.472), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(32554)
CCDS6422.1 FBXL6 gene_id:26233|Hs108|chr8          ( 539) 3690 491.7 9.2e-139
CCDS47942.1 FBXL6 gene_id:26233|Hs108|chr8         ( 533) 3627 483.5 2.6e-136


>>CCDS6422.1 FBXL6 gene_id:26233|Hs108|chr8               (539 aa)
 initn: 3690 init1: 3690 opt: 3690  Z-score: 2604.7  bits: 491.7 E(32554): 9.2e-139
Smith-Waterman score: 3690; 99.8% identity (100.0% similar) in 539 aa overlap (1-539:1-539)

               10        20        30        40        50        60
pF1KE3 MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LLASLEWLMPNRFSQLQRLTLIHWKSQVHPVLKLVGECCPRLTFLKLSGCHGVTADALVM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LLASLEWLMPNRFSQLQRLTLIHWKSQVHPVLKLVGECCPRLTFLKLSGCHGVTADALVM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 LAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAILGALLGSCCPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAILGALLGSCCPQL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 QVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 QVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 LCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 SDRLTLAKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SDRLTLAKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNL
              430       440       450       460       470       480

              490       500       510       520       530         
pF1KE3 RGTRVTPSTVSSVISSCPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS
       :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS64 RGTRVTPSTVSSVISGCPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS
              490       500       510       520       530         

>>CCDS47942.1 FBXL6 gene_id:26233|Hs108|chr8              (533 aa)
 initn: 2213 init1: 2213 opt: 3627  Z-score: 2560.6  bits: 483.5 E(32554): 2.6e-136
Smith-Waterman score: 3627; 98.7% identity (98.9% similar) in 539 aa overlap (1-539:1-533)

               10        20        30        40        50        60
pF1KE3 MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAPASRQVRRRARAAPRPRSAEDWWWDRLAPRGSGYHLLQSDSMLLVLSEPGPARPRAQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 RRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRASRRTPRQPPRGPSAAAKPKAGLRSEAAAAPAPAPAPTPTPEEGPDAGWGDRIPLEIL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 VQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VQIFGLLVAADGPMPFLGRAARVCRRWQEAASQPALWHTVTLSSPLVGRPAKGGVKAEKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LLASLEWLMPNRFSQLQRLTLIHWKSQVHPVLKLVGECCPRLTFLKLSGCHGVTADALVM
       :::::::::::::::::::::::::::      :::::::::::::::::::::::::::
CCDS47 LLASLEWLMPNRFSQLQRLTLIHWKSQ------LVGECCPRLTFLKLSGCHGVTADALVM
              190       200             210       220       230    

              250       260       270       280       290       300
pF1KE3 LAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAILGALLGSCCPQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LAKACCQLHSLDLQHSMVESTAVVSFLEEAGSRMRKLWLTYSSQTTAILGALLGSCCPQL
          240       250       260       270       280       290    

              310       320       330       340       350       360
pF1KE3 QVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QVLEVSTGINRNSIPLQLPVEALQKGCPQLQVLRLLNLMWLPKPPGRGVAPGPGFPSLEE
          300       310       320       330       340       350    

              370       380       390       400       410       420
pF1KE3 LCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LCLASSTCNFVSNEVLGRLLHGSPNLRLLDLRGCARITPAGLQDLPCRELEQLHLGLYGT
          360       370       380       390       400       410    

              430       440       450       460       470       480
pF1KE3 SDRLTLAKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SDRLTLAKEGSPFLTQKWCHTLRELDLSGQGFSEKDLEQALAAFLSTPGGSHPALCSLNL
          420       430       440       450       460       470    

              490       500       510       520       530         
pF1KE3 RGTRVTPSTVSSVISSCPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS
       :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS47 RGTRVTPSTVSSVISGCPGLLYLNLESCRCLPRGLKRAYRGLEEVQWCLEQLLTSPSPS
          480       490       500       510       520       530   




539 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:46:54 2016 done: Sun Nov  6 04:46:54 2016
 Total Scan time:  4.200 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]