Result of FASTA (omim) for
pFN21AE3227
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3227, 520 aa
1>>>pF1KE3227 520 - 520 aa - 520 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5574+/-0.000471; mu= 16.5947+/- 0.029
mean_var=66.2352+/-13.481, 0's: 0 Z-trim(108.6): 27 B-trim: 77 in 1/48
Lambda= 0.157590
statistics sampled from 16653 (16667) to 16653 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.554), E-opt: 0.2 (0.195), width: 16
Scan time: 7.290
The best scores are: opt bits E(85289)
NP_079276 (OMIM: 241080,612515) DDB1- and CUL4-ass ( 520) 3501 805.5 0
XP_006712830 (OMIM: 241080,612515) PREDICTED: DDB1 ( 433) 2909 670.9 2.1e-192
XP_006712831 (OMIM: 241080,612515) PREDICTED: DDB1 ( 433) 2909 670.9 2.1e-192
XP_016860484 (OMIM: 241080,612515) PREDICTED: DDB1 ( 385) 2480 573.3 4.3e-163
XP_016860485 (OMIM: 241080,612515) PREDICTED: DDB1 ( 372) 2216 513.3 4.9e-145
NP_001158293 (OMIM: 241080,612515) DDB1- and CUL4- ( 453) 2213 512.7 9.4e-145
XP_016860486 (OMIM: 241080,612515) PREDICTED: DDB1 ( 332) 2207 511.3 1.8e-144
XP_016860487 (OMIM: 241080,612515) PREDICTED: DDB1 ( 294) 2004 465.1 1.3e-130
XP_016860491 (OMIM: 241080,612515) PREDICTED: DDB1 ( 273) 1635 381.2 2.2e-105
XP_011510183 (OMIM: 241080,612515) PREDICTED: DDB1 ( 509) 1637 381.7 2.8e-105
XP_011510184 (OMIM: 241080,612515) PREDICTED: DDB1 ( 499) 1635 381.3 3.7e-105
XP_016860489 (OMIM: 241080,612515) PREDICTED: DDB1 ( 286) 1608 375.0 1.6e-103
XP_016860490 (OMIM: 241080,612515) PREDICTED: DDB1 ( 286) 1608 375.0 1.6e-103
XP_016860488 (OMIM: 241080,612515) PREDICTED: DDB1 ( 286) 1608 375.0 1.6e-103
>>NP_079276 (OMIM: 241080,612515) DDB1- and CUL4-associa (520 aa)
initn: 3501 init1: 3501 opt: 3501 Z-score: 4301.4 bits: 805.5 E(85289): 0
Smith-Waterman score: 3501; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE3 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_079 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
430 440 450 460 470 480
490 500 510 520
pF1KE3 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
::::::::::::::::::::::::::::::::::::::::
NP_079 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
490 500 510 520
>>XP_006712830 (OMIM: 241080,612515) PREDICTED: DDB1- an (433 aa)
initn: 2909 init1: 2909 opt: 2909 Z-score: 3575.3 bits: 670.9 E(85289): 2.1e-192
Smith-Waterman score: 2909; 100.0% identity (100.0% similar) in 433 aa overlap (88-520:1-433)
60 70 80 90 100 110
pF1KE3 PIAYERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDY
::::::::::::::::::::::::::::::
XP_006 MPKCSKSEKIEDALLWECPVGDILPNSSDY
10 20 30
120 130 140 150 160 170
pF1KE3 KSSLIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSSLIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 RQAGIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQAGIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYS
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 FQTIAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FQTIAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQI
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE3 GGHPWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGHPWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIH
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE3 VGPNQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VGPNQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDD
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE3 DPEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DPEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYS
340 350 360 370 380 390
480 490 500 510 520
pF1KE3 HEVYFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
:::::::::::::::::::::::::::::::::::::::::::
XP_006 HEVYFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
400 410 420 430
>>XP_006712831 (OMIM: 241080,612515) PREDICTED: DDB1- an (433 aa)
initn: 2909 init1: 2909 opt: 2909 Z-score: 3575.3 bits: 670.9 E(85289): 2.1e-192
Smith-Waterman score: 2909; 100.0% identity (100.0% similar) in 433 aa overlap (88-520:1-433)
60 70 80 90 100 110
pF1KE3 PIAYERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDY
::::::::::::::::::::::::::::::
XP_006 MPKCSKSEKIEDALLWECPVGDILPNSSDY
10 20 30
120 130 140 150 160 170
pF1KE3 KSSLIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSSLIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KE3 RQAGIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RQAGIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYS
100 110 120 130 140 150
240 250 260 270 280 290
pF1KE3 FQTIAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FQTIAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQI
160 170 180 190 200 210
300 310 320 330 340 350
pF1KE3 GGHPWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 GGHPWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIH
220 230 240 250 260 270
360 370 380 390 400 410
pF1KE3 VGPNQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VGPNQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDD
280 290 300 310 320 330
420 430 440 450 460 470
pF1KE3 DPEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DPEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYS
340 350 360 370 380 390
480 490 500 510 520
pF1KE3 HEVYFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
:::::::::::::::::::::::::::::::::::::::::::
XP_006 HEVYFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
400 410 420 430
>>XP_016860484 (OMIM: 241080,612515) PREDICTED: DDB1- an (385 aa)
initn: 2480 init1: 2480 opt: 2480 Z-score: 3048.9 bits: 573.3 E(85289): 4.3e-163
Smith-Waterman score: 2480; 99.5% identity (99.7% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
::::. :
XP_016 NQVKLPKAEFTLTSVDRKQGGLRAT
370 380
>>XP_016860485 (OMIM: 241080,612515) PREDICTED: DDB1- an (372 aa)
initn: 2233 init1: 2207 opt: 2216 Z-score: 2724.8 bits: 513.3 E(85289): 4.9e-145
Smith-Waterman score: 2216; 96.2% identity (97.7% similar) in 343 aa overlap (1-343:1-340)
10 20 30 40 50 60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
::::::::::::::::::::::::::: .. :.: . :.
XP_016 PWHYIVTPNKKKQKGVFHICALKDNSLWES---PMECVHIASEIAGGMCCWFCFSTACCS
310 320 330 340 350
370 380 390 400 410 420
pF1KE3 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
XP_016 LPSRAEPDGTLVVTV
360 370
>>NP_001158293 (OMIM: 241080,612515) DDB1- and CUL4-asso (453 aa)
initn: 2213 init1: 2213 opt: 2213 Z-score: 2719.8 bits: 512.7 E(85289): 9.4e-145
Smith-Waterman score: 2900; 87.1% identity (87.1% similar) in 520 aa overlap (1-520:1-453)
10 20 30 40 50 60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
:::::::::::::::::::::::::::
NP_001 PWHYIVTPNKKKQKGVFHICALKDNSL---------------------------------
310 320
370 380 390 400 410 420
pF1KE3 NQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPE
::::::::::::::::::::::::::
NP_001 ----------------------------------NENVLTVTASGRVVKKSFNLLDDDPE
330 340 350
430 440 450 460 470 480
pF1KE3 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEV
360 370 380 390 400 410
490 500 510 520
pF1KE3 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
::::::::::::::::::::::::::::::::::::::::
NP_001 YFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
420 430 440 450
>>XP_016860486 (OMIM: 241080,612515) PREDICTED: DDB1- an (332 aa)
initn: 2207 init1: 2207 opt: 2207 Z-score: 2714.5 bits: 511.3 E(85289): 1.8e-144
Smith-Waterman score: 2207; 99.7% identity (100.0% similar) in 328 aa overlap (1-328:1-328)
10 20 30 40 50 60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAEQFMQQKLDLGCACRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 PWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGP
:::::::::::::::::::::::::::.
XP_016 PWHYIVTPNKKKQKGVFHICALKDNSLSFEAN
310 320 330
>>XP_016860487 (OMIM: 241080,612515) PREDICTED: DDB1- an (294 aa)
initn: 2004 init1: 2004 opt: 2004 Z-score: 2465.9 bits: 465.1 E(85289): 1.3e-130
Smith-Waterman score: 2004; 100.0% identity (100.0% similar) in 294 aa overlap (227-520:1-294)
200 210 220 230 240 250
pF1KE3 PFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQTIAEQFMQQKLDLGCAC
::::::::::::::::::::::::::::::
XP_016 MYSSGLVRLYSFQTIAEQFMQQKLDLGCAC
10 20 30
260 270 280 290 300 310
pF1KE3 RWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGHPWHYIVTPNKKKQKGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGHPWHYIVTPNKKKQKGV
40 50 60 70 80 90
320 330 340 350 360 370
pF1KE3 FHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGPNQVKVLKLTEIENNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGPNQVKVLKLTEIENNSS
100 110 120 130 140 150
380 390 400 410 420 430
pF1KE3 QHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPEQETFKIVDYEDELDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPEQETFKIVDYEDELDLL
160 170 180 190 200 210
440 450 460 470 480 490
pF1KE3 SVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEVYFDRDLVLHIEQKPNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEVYFDRDLVLHIEQKPNR
220 230 240 250 260 270
500 510 520
pF1KE3 VFSCYVYQMICDTGEEEETINRSC
::::::::::::::::::::::::
XP_016 VFSCYVYQMICDTGEEEETINRSC
280 290
>>XP_016860491 (OMIM: 241080,612515) PREDICTED: DDB1- an (273 aa)
initn: 1732 init1: 1635 opt: 1635 Z-score: 2013.0 bits: 381.2 E(85289): 2.2e-105
Smith-Waterman score: 1700; 89.5% identity (91.5% similar) in 294 aa overlap (227-520:1-273)
200 210 220 230 240 250
pF1KE3 PFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQTIAEQFMQQKLDLGCAC
::::::::::::::::: :: :
XP_016 MYSSGLVRLYSFQTIAE----QKED-----
10 20
260 270 280 290 300 310
pF1KE3 RWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIGGHPWHYIVTPNKKKQKGV
: . . :.. .:.::::::::::::::::::::::::::::::::::::
XP_016 -W------IWDQNFSL-----LTNMPPLLFEVSSLENAFQIGGHPWHYIVTPNKKKQKGV
30 40 50 60
320 330 340 350 360 370
pF1KE3 FHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGPNQVKVLKLTEIENNSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHVGPNQVKVLKLTEIENNSS
70 80 90 100 110 120
380 390 400 410 420 430
pF1KE3 QHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPEQETFKIVDYEDELDLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDDPEQETFKIVDYEDELDLL
130 140 150 160 170 180
440 450 460 470 480 490
pF1KE3 SVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEVYFDRDLVLHIEQKPNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSHEVYFDRDLVLHIEQKPNR
190 200 210 220 230 240
500 510 520
pF1KE3 VFSCYVYQMICDTGEEEETINRSC
::::::::::::::::::::::::
XP_016 VFSCYVYQMICDTGEEEETINRSC
250 260 270
>>XP_011510183 (OMIM: 241080,612515) PREDICTED: DDB1- an (509 aa)
initn: 3231 init1: 1637 opt: 1637 Z-score: 2011.2 bits: 381.7 E(85289): 2.8e-105
Smith-Waterman score: 3198; 93.7% identity (94.4% similar) in 522 aa overlap (1-520:1-509)
10 20 30 40 50 60
pF1KE3 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGPTRKPNVCSRLSRRALGCFSRDAGVVQRTNLGILRALVCQESTKFKNVWTTHSRSPIA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YERGRIYFDNYRRCVSSVASEPRKLYEMPKCSKSEKIEDALLWECPVGDILPNSSDYKSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LIALTAHNWLLRISATTGKILEKIYLAPYCKFRYLSWDTPQEVIAVKSAQNRGSAVARQA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GIQQHVLLYLAVFRVLPFSLVGILEINKKIFGNVTDATLSHGILIVMYSSGLVRLYSFQT
190 200 210 220 230 240
250 260 270 280 290
pF1KE3 IAEQFMQQKLDLGCA--CRWGGTTGTVGEAPFGIPCNIKITDMPPLLFEVSSLENAFQIG
:::: . : . . : : .: :::::::::::::::::::
XP_011 IAEQKEDWIWDQNFSLLTSKGDTLLLIG-------------DMPPLLFEVSSLENAFQIG
250 260 270 280
300 310 320 330 340 350
pF1KE3 GHPWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHPWHYIVTPNKKKQKGVFHICALKDNSLAKNGIQEMDCCSLESDWIYFHPDASGRIIHV
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE3 GPNQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPNQVKVLKLTEIENNSSQHQISEDFVILANRENHKNENVLTVTASGRVVKKSFNLLDDD
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE3 PEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEQETFKIVDYEDELDLLSVVAVTQIDAEGKAHLDFHCNEYGTLLKSIPLVESWDVTYSH
410 420 430 440 450 460
480 490 500 510 520
pF1KE3 EVYFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
::::::::::::::::::::::::::::::::::::::::::
XP_011 EVYFDRDLVLHIEQKPNRVFSCYVYQMICDTGEEEETINRSC
470 480 490 500
520 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:37:11 2016 done: Sat Nov 5 23:37:12 2016
Total Scan time: 7.290 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]