FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3226, 519 aa
  1>>>pF1KE3226 519 - 519 aa - 519 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8414+/-0.000897; mu= 16.0383+/- 0.054
 mean_var=78.3518+/-15.649, 0's: 0 Z-trim(106.8): 19  B-trim: 160 in 1/49
 Lambda= 0.144894
 statistics sampled from 9175 (9183) to 9175 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.282), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18         ( 519) 3484 738.0 6.1e-213
CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6          ( 568)  720 160.2 5.6e-39


>>CCDS11877.1 RIOK3 gene_id:8780|Hs108|chr18              (519 aa)
 initn: 3484 init1: 3484 opt: 3484  Z-score: 3936.5  bits: 738.0 E(32554): 6.1e-213
Smith-Waterman score: 3484; 100.0% identity (100.0% similar) in 519 aa overlap (1-519:1-519)

               10        20        30        40        50        60
pF1KE3 MDLVGVASPEPGTAAAWGPSKCPWAIPQNTISCSLADVMSEQLAKELQLEEEAAVFPEVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MDLVGVASPEPGTAAAWGPSKCPWAIPQNTISCSLADVMSEQLAKELQLEEEAAVFPEVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDSKVSISFENYRKVH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDSKVSISFENYRKVH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 PYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKHDEVVCGRKNTARME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKHDEVVCGRKNTARME
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 NFAPEFQVGDGIGMDLKLSNHVFNALKQHAYSEERRSARLHEKKEHSTAEKAVDPKTRLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NFAPEFQVGDGIGMDLKLSNHVFNALKQHAYSEERRSARLHEKKEHSTAEKAVDPKTRLL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 MYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVIPTECAIKVFKTTLNEFK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 NRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAGIPCPTVVLLKKHILVMS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 FIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHAGKVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLVHADLSEYNMLWHAGKVW
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 LIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSGLNITADNEAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERELFNAVSGLNITADNEAD
              430       440       450       460       470       480

              490       500       510         
pF1KE3 FLAEIEALEKMNEDHVQKNGRKAASFLKDDGDPPLLYDE
       :::::::::::::::::::::::::::::::::::::::
CCDS11 FLAEIEALEKMNEDHVQKNGRKAASFLKDDGDPPLLYDE
              490       500       510         

>>CCDS4500.1 RIOK1 gene_id:83732|Hs108|chr6               (568 aa)
 initn: 872 init1: 673 opt: 720  Z-score: 813.3  bits: 160.2 E(32554): 5.6e-39
Smith-Waterman score: 929; 35.6% identity (69.4% similar) in 438 aa overlap (78-504:6-428)

        50        60        70        80        90       100       
pF1KE3 QLEEEAAVFPEVAVAEGPFITGENIDTSSDLMLAQMLQMEYDREYDAQLRREEKKFNGDS
                                     :......  ..:   ... . .. :   . 
CCDS45                          MDYRRLLMSRVVPGQFDDADSSDSENRDLKTVKE-
                                        10        20        30     

       110        120       130       140       150       160      
pF1KE3 KVSISFENYR-KVHPYEDSDSSEDEVDWQDTRDDPYRPAKPVPTPKKGFIGKGKDITTKH
       : .: ::. . .:.   ...  ..: .  :  :: .   . :    ::.. .: .    .
CCDS45 KDDILFEDLQDNVNENGEGEIEDEEEEGYDDDDDDWDWDEGVGKLAKGYVWNGGSNPQAN
           40        50        60        70        80        90    

        170       180         190        200       210       220   
pF1KE3 DEVVCGRKNTARMENFAPEF--QVGDGIGMD-LKLSNHVFNALKQHAYSEERRSARLHEK
        ..  . ...:.: . : .   .  . :..: :.... :.: . ... ..:    :...:
CCDS45 RQT--SDSSSAKMSTPADKVLRKFENKINLDKLNVTDSVINKVTEKSRQKEADMYRIKDK
            100       110       120       130       140       150  

           230       240       250       260       270       280   
pF1KE3 KEHSTAEKAVDPKTRLLMYKMVNSGMLETITGCISTGKESVVFHAYGGSMEDEKEDSKVI
        ...:.:...::.::....::.. :..  :.::::::::. :.::  .. :..       
CCDS45 ADRATVEQVLDPRTRMILFKMLTRGIITEINGCISTGKEANVYHASTANGESR-------
            160       170       180       190       200            

           290       300       310       320       330       340   
pF1KE3 PTECAIKVFKTTLNEFKNRDKYIKDDFRFKDRFSKLNPRKIIRMWAEKEMHNLARMQRAG
           :::..::..  ::.::::.. .:::.  . : ::::... ::::::.:: :.. : 
CCDS45 ----AIKIYKTSILVFKDRDKYVSGEFRFRHGYCKGNPRKMVKTWAEKEMRNLIRLNTAE
             210       220       230       240       250       260 

           350       360       370       380       390       400   
pF1KE3 IPCPTVVLLKKHILVMSFIGHDQVPAPKLKEVKLNSEEMKEAYYQTLHLMRQLYHECTLV
       ::::  ..:..:.:::::::.:..::: ::.:.:.  . .: : :... ::..:..  ::
CCDS45 IPCPEPIMLRSHVLVMSFIGKDDMPAPLLKNVQLSESKARELYLQVIQYMRRMYQDARLV
             270       280       290       300       310       320 

           410       420       430       440       450       460   
pF1KE3 HADLSEYNMLWHAGKVWLIDVSQSVEPTHPHGLEFLFRDCRNVSQFFQKGGVKEALSERE
       ::::::.:::.:.: :..::::::::  :::.:::: .:: ::..::.. .:  ... ::
CCDS45 HADLSEFNMLYHGGGVYIIDVSQSVEHDHPHALEFLRKDCANVNDFFMRHSVA-VMTVRE
             330       340       350       360       370        380

           470       480              490       500       510      
pF1KE3 LFNAVSGLNITADNEADFLAEIEAL-------EKMNEDHVQKNGRKAASFLKDDGDPPLL
       ::. :.  .:: .:   .:..   .       :. ..:::...  : :            
CCDS45 LFEFVTDPSITHENMDAYLSKAMEIASQRTKEERSSQDHVDEEVFKRAYIPRTLNEVKNY
              390       400       410       420       430       440

                                                                   
pF1KE3 YDE                                                         
                                                                   
CCDS45 ERDMDIIMKLKEEDMAMNAQQDNILYQTVTGLKKDLSGVQKVPALLENQVEERTCSDSED
              450       460       470       480       490       500




519 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:43:35 2016 done: Sun Nov  6 13:43:36 2016
 Total Scan time:  3.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]