FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3225, 517 aa
  1>>>pF1KE3225 517 - 517 aa - 517 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1450+/-0.00091; mu= 9.7737+/- 0.055
 mean_var=114.5571+/-23.103, 0's: 0 Z-trim(109.9): 51  B-trim: 639 in 1/50
 Lambda= 0.119829
 statistics sampled from 11170 (11220) to 11170 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.345), width:  16
 Scan time:  3.330

The best scores are:                                      opt bits E(32554)
CCDS9123.2 USP30 gene_id:84749|Hs108|chr12         ( 517) 3558 626.1 2.9e-179
CCDS76599.1 USP30 gene_id:84749|Hs108|chr12        ( 486) 3373 594.1 1.2e-169


>>CCDS9123.2 USP30 gene_id:84749|Hs108|chr12              (517 aa)
 initn: 3558 init1: 3558 opt: 3558  Z-score: 3331.7  bits: 626.1 E(32554): 2.9e-179
Smith-Waterman score: 3558; 100.0% identity (100.0% similar) in 517 aa overlap (1-517:1-517)

               10        20        30        40        50        60
pF1KE3 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 MLSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 KRRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LHLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PRVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 SPVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 VEHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 HKPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 FPLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDT
              430       440       450       460       470       480

              490       500       510       
pF1KE3 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
       :::::::::::::::::::::::::::::::::::::
CCDS91 VRKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
              490       500       510       

>>CCDS76599.1 USP30 gene_id:84749|Hs108|chr12             (486 aa)
 initn: 3373 init1: 3373 opt: 3373  Z-score: 3159.3  bits: 594.1 E(32554): 1.2e-169
Smith-Waterman score: 3373; 100.0% identity (100.0% similar) in 486 aa overlap (32-517:1-486)

              10        20        30        40        50        60 
pF1KE3 LSSRAEAAMTAADRAIQRFLRTGAAVRYKVMKNWGVIGGIAAALAAGIYVIWGPITERKK
                                     ::::::::::::::::::::::::::::::
CCDS76                               MKNWGVIGGIAAALAAGIYVIWGPITERKK
                                             10        20        30

              70        80        90       100       110       120 
pF1KE3 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RRKGLVPGLVNLGNTCFMNSLLQGLSACPAFIRWLEEFTSQYSRDQKEPPSHQYLSLTLL
               40        50        60        70        80        90

             130       140       150       160       170       180 
pF1KE3 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HLLKALSCQEVTDDEVLDASCLLDVLRMYRWQISSFEEQDAHELFHVITSSLEDERDRQP
              100       110       120       130       140       150

             190       200       210       220       230       240 
pF1KE3 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 RVTHLFDVHSLEQQSEITPKQITCRTRGSPHPTSNHWKSQHPFHGRLTSNMVCKHCEHQS
              160       170       180       190       200       210

             250       260       270       280       290       300 
pF1KE3 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PVRFDTFDSLSLSIPAATWGHPLTLDHCLHHFISSESVRDVVCDNCTKIEAKGTLNGEKV
              220       230       240       250       260       270

             310       320       330       340       350       360 
pF1KE3 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 EHQRTTFVKQLKLGKLPQCLCIHLQRLSWSSHGTPLKRHEHVQFNEFLMMDIYKYHLLGH
              280       290       300       310       320       330

             370       380       390       400       410       420 
pF1KE3 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KPSQHNPKLNKNPGPTLELQDGPGAPTPVLNQPGAPKTQIFMNGACSPSLLPTLSAPMPF
              340       350       360       370       380       390

             430       440       450       460       470       480 
pF1KE3 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PLPVVPDYSSSTYLFRLMAVVVHHGDMHSGHFVTYRRSPPSARNPLSTSNQWLWVSDDTV
              400       410       420       430       440       450

             490       500       510       
pF1KE3 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
       ::::::::::::::::::::::::::::::::::::
CCDS76 RKASLQEVLSSSAYLLFYERVLSRMQHQSQECKSEE
              460       470       480      




517 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:37:47 2016 done: Sat Nov  5 23:37:48 2016
 Total Scan time:  3.330 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]