FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3224, 510 aa
  1>>>pF1KE3224 510 - 510 aa - 510 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7015+/-0.000826; mu= 11.1062+/- 0.050
 mean_var=214.4012+/-42.500, 0's: 0 Z-trim(115.3): 21  B-trim: 8 in 1/53
 Lambda= 0.087591
 statistics sampled from 15867 (15887) to 15867 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.488), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(32554)
CCDS13000.2 RBCK1 gene_id:10616|Hs108|chr20        ( 510) 3657 474.5 1.2e-133
CCDS12998.1 RBCK1 gene_id:10616|Hs108|chr20        ( 468) 3307 430.2 2.4e-120
CCDS82588.1 RBCK1 gene_id:10616|Hs108|chr20        ( 340) 1542 207.1 2.6e-53


>>CCDS13000.2 RBCK1 gene_id:10616|Hs108|chr20             (510 aa)
 initn: 3657 init1: 3657 opt: 3657  Z-score: 2512.8  bits: 474.5 E(32554): 1.2e-133
Smith-Waterman score: 3657; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510)

               10        20        30        40        50        60
pF1KE3 MDEKTKKAEEMALSLTRAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDEKTKKAEEMALSLTRAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 QNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QNGDSAYLYLLSARNTSLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGRGQPDAVPEPPPVGWQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 AGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AGEEEALRQYQQRKQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 LHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 AENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLAL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 RAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RAQNDVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPR
              430       440       450       460       470       480

              490       500       510
pF1KE3 WGPGGPGDTSGGCRCRVNGIPCHPSCQNCH
       ::::::::::::::::::::::::::::::
CCDS13 WGPGGPGDTSGGCRCRVNGIPCHPSCQNCH
              490       500       510

>>CCDS12998.1 RBCK1 gene_id:10616|Hs108|chr20             (468 aa)
 initn: 3305 init1: 3305 opt: 3307  Z-score: 2274.2  bits: 430.2 E(32554): 2.4e-120
Smith-Waterman score: 3307; 98.5% identity (98.9% similar) in 464 aa overlap (47-510:6-468)

         20        30        40        50        60        70      
pF1KE3 RAVAGGDEQVAMKCAIWLAEQRVPLSVQLKPEVSPTQDIRLWVSVEDAQMHTVTIWLTVR
                                     :.    :. :::::::::::::::::::::
CCDS12                          MGTATPDGREDQE-RLWVSVEDAQMHTVTIWLTVR
                                        10         20        30    

         80        90       100       110       120       130      
pF1KE3 PDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSARNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLSARNT
           40        50        60        70        80        90    

        140       150       160       170       180       190      
pF1KE3 SLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SLNPQELQRERQLRMLEDLGFKDLTLQPRGPLEPGPPKPGVPQEPGRGQPDAVPEPPPVG
          100       110       120       130       140       150    

        200       210       220       230       240       250      
pF1KE3 WQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQRKQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WQCPGCTFINKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQRKQQ
          160       170       180       190       200       210    

        260       270       280       290       300       310      
pF1KE3 QQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNS
          220       230       240       250       260       270    

        320       330       340       350       360       370      
pF1KE3 QEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDC
          280       290       300       310       320       330    

        380       390       400       410       420       430      
pF1KE3 KGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLK
          340       350       360       370       380       390    

        440       450       460       470       480       490      
pF1KE3 VMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCR
          400       410       420       430       440       450    

        500       510
pF1KE3 VNGIPCHPSCQNCH
       ::::::::::::::
CCDS12 VNGIPCHPSCQNCH
          460        

>>CCDS82588.1 RBCK1 gene_id:10616|Hs108|chr20             (340 aa)
 initn: 1530 init1: 1530 opt: 1542  Z-score: 1070.5  bits: 207.1 E(32554): 2.6e-53
Smith-Waterman score: 1542; 97.7% identity (98.6% similar) in 213 aa overlap (298-510:129-340)

       270       280       290       300       310       320       
pF1KE3 LDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIRNSQEAEVSCPFID
                                     :.:. :  ::::::::::::::::::::::
CCDS82 CAAGRAPRPTRSPPHTSPTRRSERAWRARRRRCVST-SRECLQGTIRNSQEAEVSCPFID
      100       110       120       130        140       150       

       330       340       350       360       370       380       
pF1KE3 NTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFEDDVN
       160       170       180       190       200       210       

       390       400       410       420       430       440       
pF1KE3 EFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EFTCPVCFHVNCLLCKAIHEQMNCKEYQEDLALRAQNDVAARQTTEMLKVMLQQGEAMRC
       220       230       240       250       260       270       

       450       460       470       480       490       500       
pF1KE3 PQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSCQ
       280       290       300       310       320       330       

       510
pF1KE3 NCH
       :::
CCDS82 NCH
       340




510 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:10:44 2016 done: Sun Nov  6 13:10:44 2016
 Total Scan time:  3.850 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]