FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3223, 506 aa
  1>>>pF1KE3223 506 - 506 aa - 506 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8613+/-0.00104; mu= 11.0170+/- 0.063
 mean_var=99.0878+/-19.402, 0's: 0 Z-trim(106.1): 23  B-trim: 63 in 1/52
 Lambda= 0.128844
 statistics sampled from 8773 (8785) to 8773 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.27), width:  16
 Scan time:  3.470

The best scores are:                                      opt bits E(32554)
CCDS42356.1 CDK5RAP3 gene_id:80279|Hs108|chr17     ( 506) 3268 618.2 6.8e-177
CCDS62232.1 CDK5RAP3 gene_id:80279|Hs108|chr17     ( 531) 3256 615.9 3.4e-176


>>CCDS42356.1 CDK5RAP3 gene_id:80279|Hs108|chr17          (506 aa)
 initn: 3268 init1: 3268 opt: 3268  Z-score: 3289.2  bits: 618.2 E(32554): 6.8e-177
Smith-Waterman score: 3268; 100.0% identity (100.0% similar) in 506 aa overlap (1-506:1-506)

               10        20        30        40        50        60
pF1KE3 MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVLTIREKINAAIQDMPESEEIAQLLSG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 SYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMKDWQEIIALYEKDNTYLVELSSLLVR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 NVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAAEMREQFYHSCKQYGITGENVRGELL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 ALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNSTVYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFVCESPTEQVLPMLRFVQKRGNSTVYE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 WRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVEAVSEGTDSGISAEAAGIDWGIFPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 WRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVEAVSEGTDSGISAEAAGIDWGIFPES
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 DSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVARGPDALTLLEYTETRNQFLDELMEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVARGPDALTLLEYTETRNQFLDELMEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 EIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTKEKMVTMVSVLEDLIGKLTSLQLQHL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE3 FMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 FMILASPRYVDRVTEFLQQKLKQSQLLALKKELMVQKQQEALEEQAALEPKLDLLLEKTK
              430       440       450       460       470       480

              490       500      
pF1KE3 ELQKLIEADISKRYSGRPVNLMGTSL
       ::::::::::::::::::::::::::
CCDS42 ELQKLIEADISKRYSGRPVNLMGTSL
              490       500      

>>CCDS62232.1 CDK5RAP3 gene_id:80279|Hs108|chr17          (531 aa)
 initn: 3256 init1: 3256 opt: 3256  Z-score: 3276.8  bits: 615.9 E(32554): 3.4e-176
Smith-Waterman score: 3256; 99.8% identity (100.0% similar) in 505 aa overlap (2-506:27-531)

                                        10        20        30     
pF1KE3                          MEDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVL
                                 .:::::::::::::::::::::::::::::::::
CCDS62 MRRQSMTSATRDLHTALDGKATQGGKKDHQHVPIDIQTSKLLDWLVDRRHCSLKWQSLVL
               10        20        30        40        50        60

          40        50        60        70        80        90     
pF1KE3 TIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TIREKINAAIQDMPESEEIAQLLSGSYIHYFHCLRILDLLKGTEASTKNIFGRYSSQRMK
               70        80        90       100       110       120

         100       110       120       130       140       150     
pF1KE3 DWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 DWQEIIALYEKDNTYLVELSSLLVRNVNYEIPSLKKQIAKCQQLQQEYSRKEEECQAGAA
              130       140       150       160       170       180

         160       170       180       190       200       210     
pF1KE3 EMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EMREQFYHSCKQYGITGENVRGELLALVKDLPSQLAEIGAAAQQSLGEAIDVYQASVGFV
              190       200       210       220       230       240

         220       230       240       250       260       270     
pF1KE3 CESPTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 CESPTEQVLPMLRFVQKRGNSTVYEWRTGTEPSVVERPHLEELPEQVAEDAIDWGDFGVE
              250       260       270       280       290       300

         280       290       300       310       320       330     
pF1KE3 AVSEGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 AVSEGTDSGISAEAAGIDWGIFPESDSKDPGGDGIDWGDDAVALQITVLEAGTQAPEGVA
              310       320       330       340       350       360

         340       350       360       370       380       390     
pF1KE3 RGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RGPDALTLLEYTETRNQFLDELMELEIFLAQRAVELSEEADVLSVSQFQLAPAILQGQTK
              370       380       390       400       410       420

         400       410       420       430       440       450     
pF1KE3 EKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EKMVTMVSVLEDLIGKLTSLQLQHLFMILASPRYVDRVTEFLQQKLKQSQLLALKKELMV
              430       440       450       460       470       480

         460       470       480       490       500      
pF1KE3 QKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMGTSL
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QKQQEALEEQAALEPKLDLLLEKTKELQKLIEADISKRYSGRPVNLMGTSL
              490       500       510       520       530 




506 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 06:01:23 2016 done: Sun Nov  6 06:01:23 2016
 Total Scan time:  3.470 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]