FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3207, 477 aa
  1>>>pF1KE3207 477 - 477 aa - 477 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0317+/-0.000777; mu= 14.5631+/- 0.047
 mean_var=79.3982+/-15.788, 0's: 0 Z-trim(108.8): 11  B-trim: 0 in 0/52
 Lambda= 0.143936
 statistics sampled from 10470 (10475) to 10470 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS1768.1 TRMT61B gene_id:55006|Hs108|chr2        ( 477) 3243 682.9 1.9e-196


>>CCDS1768.1 TRMT61B gene_id:55006|Hs108|chr2             (477 aa)
 initn: 3243 init1: 3243 opt: 3243  Z-score: 3640.2  bits: 682.9 E(32554): 1.9e-196
Smith-Waterman score: 3243; 100.0% identity (100.0% similar) in 477 aa overlap (1-477:1-477)

               10        20        30        40        50        60
pF1KE3 MLMAWCRGPVLLCLRQGLGTNSFLHGLGQEPFEGARSLCCRSSPRDLRDGEREHEAAQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MLMAWCRGPVLLCLRQGLGTNSFLHGLGQEPFEGARSLCCRSSPRDLRDGEREHEAAQRK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 APGAESCPSLPLSISDIGTGCLSSLENLRLPTLREESSPRELEDSSGDQGRCGPTHQGSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 APGAESCPSLPLSISDIGTGCLSSLENLRLPTLREESSPRELEDSSGDQGRCGPTHQGSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 DPSMLSQAQSATEVEERHVSPSCSTSRERPFQAGELILAETGEGETKFKKLFRLNNFGLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DPSMLSQAQSATEVEERHVSPSCSTSRERPFQAGELILAETGEGETKFKKLFRLNNFGLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 NSNWGAVPFGKIVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 VNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VNITQVIELLDGIRTCELALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLD
              370       380       390       400       410       420

              430       440       450       460       470       
pF1KE3 SQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGHTAFLVKLRKVKPQLN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SQEKIGVKGELFQEDDHEESHSDFPYGSFPYVARPVHWQPGHTAFLVKLRKVKPQLN
              430       440       450       460       470       




477 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 18:27:39 2016 done: Mon Nov  7 18:27:40 2016
 Total Scan time:  2.740 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]