Result of FASTA (ccds) for
pFN21AE3206
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3206, 476 aa
1>>>pF1KE3206 476 - 476 aa - 476 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.9110+/-0.00144; mu= 4.8882+/- 0.084
mean_var=179.0721+/-36.933, 0's: 0 Z-trim(105.5): 137 B-trim: 312 in 1/49
Lambda= 0.095843
statistics sampled from 8311 (8459) to 8311 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.26), width: 16
Scan time: 3.010
The best scores are: opt bits E(32554)
CCDS2208.1 WDSUB1 gene_id:151525|Hs108|chr2 ( 476) 3239 461.0 1.2e-129
CCDS82525.1 WDSUB1 gene_id:151525|Hs108|chr2 ( 429) 2612 374.3 1.4e-103
CCDS77477.1 WDSUB1 gene_id:151525|Hs108|chr2 ( 384) 1595 233.6 2.8e-61
>>CCDS2208.1 WDSUB1 gene_id:151525|Hs108|chr2 (476 aa)
initn: 3239 init1: 3239 opt: 3239 Z-score: 2440.9 bits: 461.0 E(32554): 1.2e-129
Smith-Waterman score: 3239; 100.0% identity (100.0% similar) in 476 aa overlap (1-476:1-476)
10 20 30 40 50 60
pF1KE3 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 CFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 CFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTLSGHCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTLSGHCA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 PVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 MDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 KELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 KELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDP
370 380 390 400 410 420
430 440 450 460 470
pF1KE3 VIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK
430 440 450 460 470
>>CCDS82525.1 WDSUB1 gene_id:151525|Hs108|chr2 (429 aa)
initn: 2805 init1: 2606 opt: 2612 Z-score: 1972.9 bits: 374.3 E(32554): 1.4e-103
Smith-Waterman score: 2842; 90.1% identity (90.1% similar) in 476 aa overlap (1-476:1-429)
10 20 30 40 50 60
pF1KE3 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 CFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTLSGHCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTLSGHCA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 PVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 MDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 KELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDP
:::::::::::::::::
CCDS82 KELLNLTKESLADDLKI-------------------------------------------
370
430 440 450 460 470
pF1KE3 VIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ----DGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK
380 390 400 410 420
>>CCDS77477.1 WDSUB1 gene_id:151525|Hs108|chr2 (384 aa)
initn: 1686 init1: 1595 opt: 1595 Z-score: 1213.6 bits: 233.6 E(32554): 2.8e-61
Smith-Waterman score: 2433; 80.7% identity (80.7% similar) in 476 aa overlap (1-476:1-384)
10 20 30 40 50 60
pF1KE3 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MVKLIHTLADHGDDVNCCAFSFSLLATCSLDKTIRLYSLRDFTELPHSPLKFHTYAVHCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 CFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CFSPSGHILASCSTDGTTVLWNTENGQMLAVMEQPSGSPVRVCQFSPDSTCLASGAADGT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 VVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VVLWNAQSYKLYRCGSVKDGSLAACAFSPNGSFFVTGSSCGDLTVWDDKMRCLHSEKAHD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHILGFELKYKSTLSGHCA
:::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGITCCDFSSQPVSDGEQGLQFFRLASCGQDCQVKIWIVSFTHIL---------------
190 200 210 220
250 260 270 280 290 300
pF1KE3 PVLACAFSHDGQMLVSGSVDKSVIVYDTNTENILHTLTQHTRYVTTCAFAPNTLLLATGS
CCDS77 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE3 MDKTVNIWQFDLETLCQARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDG
:::::::::::::::::::::::::::::::::::::::::::
CCDS77 -----------------ARRTEHQLKQFTEDWSEEDVSTWLCAQDLKDLVGIFKMNNIDG
230 240 250 260
370 380 390 400 410 420
pF1KE3 KELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KELLNLTKESLADDLKIESLGLRSKVLRKIEELRTKVKSLSSGIPDEFICPITRELMKDP
270 280 290 300 310 320
430 440 450 460 470
pF1KE3 VIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 VIASDGYSYEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETHQK
330 340 350 360 370 380
476 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 19:41:35 2016 done: Thu Nov 3 19:41:36 2016
Total Scan time: 3.010 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]