Result of FASTA (omim) for
pFN21AE3192
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3192, 447 aa
1>>>pF1KE3192 447 - 447 aa - 447 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6549+/-0.00037; mu= 16.5335+/- 0.023
mean_var=83.1748+/-16.969, 0's: 0 Z-trim(113.6): 32 B-trim: 0 in 0/55
Lambda= 0.140630
statistics sampled from 23067 (23088) to 23067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.271), width: 16
Scan time: 8.780
The best scores are: opt bits E(85289)
NP_036479 (OMIM: 609091) F-box only protein 9 isof ( 447) 3032 625.1 1.1e-178
NP_258441 (OMIM: 609091) F-box only protein 9 isof ( 437) 2942 606.9 3.5e-173
NP_258442 (OMIM: 609091) F-box only protein 9 isof ( 403) 2724 562.6 6.7e-160
XP_005249052 (OMIM: 609091) PREDICTED: F-box only ( 403) 2724 562.6 6.7e-160
XP_005249053 (OMIM: 609091) PREDICTED: F-box only ( 403) 2724 562.6 6.7e-160
XP_011528408 (OMIM: 260300,605648) PREDICTED: F-bo ( 366) 167 43.8 0.00092
NP_001244919 (OMIM: 260300,605648) F-box only prot ( 408) 167 43.8 0.001
NP_001028196 (OMIM: 260300,605648) F-box only prot ( 443) 167 43.8 0.0011
NP_036311 (OMIM: 260300,605648) F-box only protein ( 522) 167 43.9 0.0012
>>NP_036479 (OMIM: 609091) F-box only protein 9 isoform (447 aa)
initn: 3032 init1: 3032 opt: 3032 Z-score: 3328.8 bits: 625.1 E(85289): 1.1e-178
Smith-Waterman score: 3032; 100.0% identity (100.0% similar) in 447 aa overlap (1-447:1-447)
10 20 30 40 50 60
pF1KE3 MPDIIWVFPPQAEAEEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MPDIIWVFPPQAEAEEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 SNLENRPCRAARGSLQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 SNLENRPCRAARGSLQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 MQLVPDIEFKITYTRSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MQLVPDIEFKITYTRSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 LESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 LESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 WGRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 WGRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 RFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 RFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 EKPLDYKYRYFRRVPVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 EKPLDYKYRYFRRVPVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVS
370 380 390 400 410 420
430 440
pF1KE3 AFEIDKMYTPLFFARVRSYTAFSERPL
:::::::::::::::::::::::::::
NP_036 AFEIDKMYTPLFFARVRSYTAFSERPL
430 440
>>NP_258441 (OMIM: 609091) F-box only protein 9 isoform (437 aa)
initn: 2942 init1: 2942 opt: 2942 Z-score: 3230.2 bits: 606.9 E(85289): 3.5e-173
Smith-Waterman score: 2942; 100.0% identity (100.0% similar) in 436 aa overlap (12-447:2-437)
10 20 30 40 50 60
pF1KE3 MPDIIWVFPPQAEAEEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 MAEAEEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSS
10 20 30 40 50
70 80 90 100 110 120
pF1KE3 SNLENRPCRAARGSLQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 SNLENRPCRAARGSLQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE3 MQLVPDIEFKITYTRSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 MQLVPDIEFKITYTRSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE3 LESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 LESSQIHISVLPMEVLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE3 WGRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 WGRSCIKLVPYTSWREMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYI
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE3 RFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 RFFPDGHVMMLTTPEEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKE
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE3 EKPLDYKYRYFRRVPVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 EKPLDYKYRYFRRVPVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVS
360 370 380 390 400 410
430 440
pF1KE3 AFEIDKMYTPLFFARVRSYTAFSERPL
:::::::::::::::::::::::::::
NP_258 AFEIDKMYTPLFFARVRSYTAFSERPL
420 430
>>NP_258442 (OMIM: 609091) F-box only protein 9 isoform (403 aa)
initn: 2724 init1: 2724 opt: 2724 Z-score: 2991.7 bits: 562.6 E(85289): 6.7e-160
Smith-Waterman score: 2724; 100.0% identity (100.0% similar) in 403 aa overlap (45-447:1-403)
20 30 40 50 60 70
pF1KE3 EEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSSSNLENRPCRAARGS
::::::::::::::::::::::::::::::
NP_258 MFRAQWMFELAPGVSSSNLENRPCRAARGS
10 20 30
80 90 100 110 120 130
pF1KE3 LQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 LQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 RSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIHISVLPME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 RSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIHISVLPME
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 VLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 VLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSW
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE3 REMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 REMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTP
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE3 EEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKEEKPLDYKYRYFRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 EEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKEEKPLDYKYRYFRRV
280 290 300 310 320 330
380 390 400 410 420 430
pF1KE3 PVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVSAFEIDKMYTPLFFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_258 PVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVSAFEIDKMYTPLFFA
340 350 360 370 380 390
440
pF1KE3 RVRSYTAFSERPL
:::::::::::::
NP_258 RVRSYTAFSERPL
400
>>XP_005249052 (OMIM: 609091) PREDICTED: F-box only prot (403 aa)
initn: 2724 init1: 2724 opt: 2724 Z-score: 2991.7 bits: 562.6 E(85289): 6.7e-160
Smith-Waterman score: 2724; 100.0% identity (100.0% similar) in 403 aa overlap (45-447:1-403)
20 30 40 50 60 70
pF1KE3 EEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSSSNLENRPCRAARGS
::::::::::::::::::::::::::::::
XP_005 MFRAQWMFELAPGVSSSNLENRPCRAARGS
10 20 30
80 90 100 110 120 130
pF1KE3 LQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 RSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIHISVLPME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIHISVLPME
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 VLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSW
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE3 REMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 REMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTP
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE3 EEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKEEKPLDYKYRYFRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKEEKPLDYKYRYFRRV
280 290 300 310 320 330
380 390 400 410 420 430
pF1KE3 PVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVSAFEIDKMYTPLFFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVSAFEIDKMYTPLFFA
340 350 360 370 380 390
440
pF1KE3 RVRSYTAFSERPL
:::::::::::::
XP_005 RVRSYTAFSERPL
400
>>XP_005249053 (OMIM: 609091) PREDICTED: F-box only prot (403 aa)
initn: 2724 init1: 2724 opt: 2724 Z-score: 2991.7 bits: 562.6 E(85289): 6.7e-160
Smith-Waterman score: 2724; 100.0% identity (100.0% similar) in 403 aa overlap (45-447:1-403)
20 30 40 50 60 70
pF1KE3 EEDCHSDTVRADDDEENESPAETDLQAQLQMFRAQWMFELAPGVSSSNLENRPCRAARGS
::::::::::::::::::::::::::::::
XP_005 MFRAQWMFELAPGVSSSNLENRPCRAARGS
10 20 30
80 90 100 110 120 130
pF1KE3 LQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQKTSADTKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYT
40 50 60 70 80 90
140 150 160 170 180 190
pF1KE3 RSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIHISVLPME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RSPDGDGVGNSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIHISVLPME
100 110 120 130 140 150
200 210 220 230 240 250
pF1KE3 VLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VLMYIFRWVVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSW
160 170 180 190 200 210
260 270 280 290 300 310
pF1KE3 REMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 REMFLERPRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTP
220 230 240 250 260 270
320 330 340 350 360 370
pF1KE3 EEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKEEKPLDYKYRYFRRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEPQSIVPRLRTRNTRTDAILLGHYRLSQDTDNQTKVFAVITKKKEEKPLDYKYRYFRRV
280 290 300 310 320 330
380 390 400 410 420 430
pF1KE3 PVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVSAFEIDKMYTPLFFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVQEADQSFHVGLQLCSSGHQRFNKLIWIHHSCHITYKSTGETAVSAFEIDKMYTPLFFA
340 350 360 370 380 390
440
pF1KE3 RVRSYTAFSERPL
:::::::::::::
XP_005 RVRSYTAFSERPL
400
>>XP_011528408 (OMIM: 260300,605648) PREDICTED: F-box on (366 aa)
initn: 134 init1: 99 opt: 167 Z-score: 188.6 bits: 43.8 E(85289): 0.00092
Smith-Waterman score: 179; 29.1% identity (56.4% similar) in 172 aa overlap (114-277:115-266)
90 100 110 120 130 140
pF1KE3 GKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVG
:. .: .::.:. : . :..:.
XP_011 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKR-LQLLPE-SF---ICKEKLGENVA
90 100 110 120 130
150 160 170 180 190 200
pF1KE3 NSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIH-ISVLPMEVLMYIFRW
: : : .:.. : :..::.. .: . . :. .. . :::.:. . :::
XP_011 NIY----KDLQKLSRL---FKDQLVY--PLLAFTRQALNLPDVFGLVVLPLELKLRIFRL
140 150 160 170 180 190
210 220 230 240 250 260
pF1KE3 VVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSWREMFLER-
::.::. .:: ::: .. . :: .::. :. . . .. : :.:.:.. .:
XP_011 -----LDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNTVR-VQDTDWKELYRKRH
200 210 220 230 240
270 280 290 300 310
pF1KE3 ------PRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPE
:. :: . :.: :
XP_011 IQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDP
250 260 270 280 290 300
>>NP_001244919 (OMIM: 260300,605648) F-box only protein (408 aa)
initn: 134 init1: 99 opt: 167 Z-score: 187.9 bits: 43.8 E(85289): 0.001
Smith-Waterman score: 179; 29.1% identity (56.4% similar) in 172 aa overlap (114-277:157-308)
90 100 110 120 130 140
pF1KE3 GKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVG
:. .: .::.:. : . :..:.
NP_001 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKR-LQLLPE-SF---ICKEKLGENVA
130 140 150 160 170 180
150 160 170 180 190 200
pF1KE3 NSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIH-ISVLPMEVLMYIFRW
: : : .:.. : :..::.. .: . . :. .. . :::.:. . :::
NP_001 NIY----KDLQKLSRL---FKDQLVY--PLLAFTRQALNLPDVFGLVVLPLELKLRIFRL
190 200 210 220 230
210 220 230 240 250 260
pF1KE3 VVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSWREMFLER-
::.::. .:: ::: .. . :: .::. :. . . .. : :.:.:.. .:
NP_001 -----LDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNTVR-VQDTDWKELYRKRH
240 250 260 270 280
270 280 290 300 310
pF1KE3 ------PRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPE
:. :: . :.: :
NP_001 IQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDP
290 300 310 320 330 340
>>NP_001028196 (OMIM: 260300,605648) F-box only protein (443 aa)
initn: 134 init1: 99 opt: 167 Z-score: 187.4 bits: 43.8 E(85289): 0.0011
Smith-Waterman score: 179; 29.1% identity (56.4% similar) in 172 aa overlap (114-277:192-343)
90 100 110 120 130 140
pF1KE3 GKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVG
:. .: .::.:. : . :..:.
NP_001 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKR-LQLLPE-SF---ICKEKLGENVA
170 180 190 200 210
150 160 170 180 190 200
pF1KE3 NSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIH-ISVLPMEVLMYIFRW
: : : .:.. : :..::.. .: . . :. .. . :::.:. . :::
NP_001 NIY----KDLQKLSRL---FKDQLVY--PLLAFTRQALNLPDVFGLVVLPLELKLRIFRL
220 230 240 250 260
210 220 230 240 250 260
pF1KE3 VVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSWREMFLER-
::.::. .:: ::: .. . :: .::. :. . . .. : :.:.:.. .:
NP_001 -----LDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNTVR-VQDTDWKELYRKRH
270 280 290 300 310 320
270 280 290 300 310
pF1KE3 ------PRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPE
:. :: . :.: :
NP_001 IQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDP
330 340 350 360 370 380
>>NP_036311 (OMIM: 260300,605648) F-box only protein 7 i (522 aa)
initn: 134 init1: 99 opt: 167 Z-score: 186.4 bits: 43.9 E(85289): 0.0012
Smith-Waterman score: 179; 29.1% identity (56.4% similar) in 172 aa overlap (114-277:271-422)
90 100 110 120 130 140
pF1KE3 GKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVG
:. .: .::.:. : . :..:.
NP_036 PLCEGSSATLTCVPLGNLIVVNATLKINNEIRSVKR-LQLLPE-SF---ICKEKLGENVA
250 260 270 280 290
150 160 170 180 190 200
pF1KE3 NSYIEDNDDDSKMADLLSYFQQQLTFQESVLKLCQPELESSQIH-ISVLPMEVLMYIFRW
: : : .:.. : :..::.. .: . . :. .. . :::.:. . :::
NP_036 NIY----KDLQKLSRL---FKDQLVY--PLLAFTRQALNLPDVFGLVVLPLELKLRIFRL
300 310 320 330 340
210 220 230 240 250 260
pF1KE3 VVSSDLDLRSLEQLSLVCRGFYICARDPEIWRLACLKVWGRSCIKLVPYTSWREMFLER-
::.::. .:: ::: .. . :: .::. :. . . .. : :.:.:.. .:
NP_036 -----LDVRSVLSLSAVCRDLFTASNDPLLWRFLYLRDFRDNTVR-VQDTDWKELYRKRH
350 360 370 380 390 400
270 280 290 300 310
pF1KE3 ------PRVRFDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPE
:. :: . :.: :
NP_036 IQRKESPKGRFVMLLPSSTHTIPFYPNPLHPRPFPSSRLPPGIIGGEYDQRPTLPYVGDP
410 420 430 440 450 460
447 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:48:07 2016 done: Sun Nov 6 04:48:09 2016
Total Scan time: 8.780 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]