Result of FASTA (omim) for
pFN21AE3188
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3188, 432 aa
1>>>pF1KE3188 432 - 432 aa - 432 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4271+/-0.000353; mu= 14.2648+/- 0.022
mean_var=165.1611+/-35.781, 0's: 0 Z-trim(119.2): 228 B-trim: 1507 in 2/53
Lambda= 0.099798
statistics sampled from 32739 (33058) to 32739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.388), width: 16
Scan time: 10.370
The best scores are: opt bits E(85289)
NP_115698 (OMIM: 611358,614192) E3 ubiquitin-prote ( 432) 2982 441.4 2.2e-123
XP_005258100 (OMIM: 611358,614192) PREDICTED: E3 u ( 251) 1727 260.4 3.8e-69
XP_016880712 (OMIM: 611358,614192) PREDICTED: E3 u ( 251) 1727 260.4 3.8e-69
NP_001171921 (OMIM: 611358,614192) E3 ubiquitin-pr ( 286) 1558 236.1 8.6e-62
NP_922921 (OMIM: 611358,614192) E3 ubiquitin-prote ( 210) 1201 184.6 2.1e-46
NP_005073 (OMIM: 600453) E3 ubiquitin/ISG15 ligase ( 630) 306 56.3 2.6e-07
XP_011517383 (OMIM: 609829) PREDICTED: FSD1-like p ( 311) 252 48.2 3.7e-05
XP_011517382 (OMIM: 609829) PREDICTED: FSD1-like p ( 322) 252 48.2 3.7e-05
XP_016870675 (OMIM: 609829) PREDICTED: FSD1-like p ( 322) 252 48.2 3.7e-05
NP_001274120 (OMIM: 609829) FSD1-like protein isof ( 508) 254 48.7 4.1e-05
XP_016870673 (OMIM: 609829) PREDICTED: FSD1-like p ( 384) 252 48.3 4.2e-05
XP_005252317 (OMIM: 609829) PREDICTED: FSD1-like p ( 384) 252 48.3 4.2e-05
NP_001274121 (OMIM: 609829) FSD1-like protein isof ( 497) 252 48.4 4.9e-05
XP_016870672 (OMIM: 609829) PREDICTED: FSD1-like p ( 498) 252 48.4 5e-05
NP_001317668 (OMIM: 609829) FSD1-like protein isof ( 509) 252 48.4 5e-05
XP_016870671 (OMIM: 609829) PREDICTED: FSD1-like p ( 529) 252 48.4 5.1e-05
NP_001138785 (OMIM: 609829) FSD1-like protein isof ( 530) 252 48.4 5.2e-05
XP_005252311 (OMIM: 609829) PREDICTED: FSD1-like p ( 541) 252 48.4 5.2e-05
XP_011517381 (OMIM: 609829) PREDICTED: FSD1-like p ( 542) 252 48.4 5.2e-05
XP_011517380 (OMIM: 609829) PREDICTED: FSD1-like p ( 543) 252 48.4 5.2e-05
XP_011517379 (OMIM: 609829) PREDICTED: FSD1-like p ( 547) 252 48.4 5.3e-05
XP_006715046 (OMIM: 613593) PREDICTED: butyrophili ( 419) 215 43.0 0.0018
NP_001332879 (OMIM: 606125) probable E3 ubiquitin- ( 519) 216 43.2 0.0018
NP_001138480 (OMIM: 613593) butyrophilin subfamily ( 461) 215 43.0 0.0019
XP_016857901 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 467) 215 43.0 0.0019
NP_112174 (OMIM: 606125) probable E3 ubiquitin-pro ( 551) 216 43.3 0.0019
XP_005248890 (OMIM: 613593) PREDICTED: butyrophili ( 506) 215 43.1 0.002
NP_001229732 (OMIM: 613595) butyrophilin subfamily ( 374) 213 42.6 0.002
NP_008979 (OMIM: 613593) butyrophilin subfamily 3 ( 513) 215 43.1 0.002
XP_011542587 (OMIM: 607868) PREDICTED: E3 ubiquiti ( 391) 213 42.7 0.0021
NP_660215 (OMIM: 607868) E3 ubiquitin-protein liga ( 468) 214 42.9 0.0021
NP_932078 (OMIM: 613595) butyrophilin subfamily 3 ( 535) 213 42.8 0.0025
NP_008925 (OMIM: 613595) butyrophilin subfamily 3 ( 584) 213 42.9 0.0027
XP_011517546 (OMIM: 606556) PREDICTED: tripartite ( 285) 208 41.8 0.0028
XP_011532955 (OMIM: 615606) PREDICTED: butyrophili ( 292) 207 41.6 0.0031
NP_001153182 (OMIM: 615606) butyrophilin-like prot ( 316) 207 41.7 0.0033
XP_006717401 (OMIM: 606556) PREDICTED: tripartite ( 392) 208 41.9 0.0034
NP_001153181 (OMIM: 615606) butyrophilin-like prot ( 375) 207 41.8 0.0037
NP_055603 (OMIM: 606556) tripartite motif-containi ( 442) 208 42.0 0.0037
NP_150088 (OMIM: 606556) tripartite motif-containi ( 442) 208 42.0 0.0037
XP_005252377 (OMIM: 606556) PREDICTED: tripartite ( 442) 208 42.0 0.0037
XP_016870842 (OMIM: 606556) PREDICTED: tripartite ( 442) 208 42.0 0.0037
XP_016870841 (OMIM: 606556) PREDICTED: tripartite ( 442) 208 42.0 0.0037
NP_067076 (OMIM: 605700) E3 ubiquitin-protein liga ( 518) 209 42.2 0.0037
XP_011532954 (OMIM: 615606) PREDICTED: butyrophili ( 381) 207 41.8 0.0037
NP_001153179 (OMIM: 615606) butyrophilin-like prot ( 384) 207 41.8 0.0037
XP_011532953 (OMIM: 615606) PREDICTED: butyrophili ( 389) 207 41.8 0.0038
XP_011532952 (OMIM: 615606) PREDICTED: butyrophili ( 450) 207 41.9 0.0041
XP_011532951 (OMIM: 615606) PREDICTED: butyrophili ( 462) 207 41.9 0.0042
XP_006710376 (OMIM: 111620,111750,609017) PREDICTE ( 475) 207 41.9 0.0043
>>NP_115698 (OMIM: 611358,614192) E3 ubiquitin-protein l (432 aa)
initn: 2982 init1: 2982 opt: 2982 Z-score: 2336.3 bits: 441.4 E(85289): 2.2e-123
Smith-Waterman score: 2982; 100.0% identity (100.0% similar) in 432 aa overlap (1-432:1-432)
10 20 30 40 50 60
pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 QVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQLSAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 QVLCSQALSSGKHYWEVDTRNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQLSAW
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE3 HMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 HMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLH
370 380 390 400 410 420
430
pF1KE3 PGNYLIIKQVKV
::::::::::::
NP_115 PGNYLIIKQVKV
430
>>XP_005258100 (OMIM: 611358,614192) PREDICTED: E3 ubiqu (251 aa)
initn: 1727 init1: 1727 opt: 1727 Z-score: 1362.5 bits: 260.4 E(85289): 3.8e-69
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 251 aa overlap (182-432:1-251)
160 170 180 190 200 210
pF1KE3 LQNQRPLSESGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEEIQEKL
::::::::::::::::::::::::::::::
XP_005 MASPKLVTSDTAAGKIRDILHDLEEIQEKL
10 20 30
220 230 240 250 260 270
pF1KE3 QESVTWKEAPEAQMQGELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QESVTWKEAPEAQMQGELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCS
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE3 LEVSKDSRTVTVSHRPQPYRWSCERFSTSQVLCSQALSSGKHYWEVDTRNCSHWAVGVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEVSKDSRTVTVSHRPQPYRWSCERFSTSQVLCSQALSSGKHYWEVDTRNCSHWAVGVAS
100 110 120 130 140 150
340 350 360 370 380 390
pF1KE3 WEMSRDQVLGRTMDSCCVEWKGTSQLSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 WEMSRDQVLGRTMDSCCVEWKGTSQLSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYS
160 170 180 190 200 210
400 410 420 430
pF1KE3 VDNQEKLLYECTISASSPLYPAFWLYGLHPGNYLIIKQVKV
:::::::::::::::::::::::::::::::::::::::::
XP_005 VDNQEKLLYECTISASSPLYPAFWLYGLHPGNYLIIKQVKV
220 230 240 250
>>XP_016880712 (OMIM: 611358,614192) PREDICTED: E3 ubiqu (251 aa)
initn: 1727 init1: 1727 opt: 1727 Z-score: 1362.5 bits: 260.4 E(85289): 3.8e-69
Smith-Waterman score: 1727; 100.0% identity (100.0% similar) in 251 aa overlap (182-432:1-251)
160 170 180 190 200 210
pF1KE3 LQNQRPLSESGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAGKIRDILHDLEEIQEKL
::::::::::::::::::::::::::::::
XP_016 MASPKLVTSDTAAGKIRDILHDLEEIQEKL
10 20 30
220 230 240 250 260 270
pF1KE3 QESVTWKEAPEAQMQGELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QESVTWKEAPEAQMQGELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCS
40 50 60 70 80 90
280 290 300 310 320 330
pF1KE3 LEVSKDSRTVTVSHRPQPYRWSCERFSTSQVLCSQALSSGKHYWEVDTRNCSHWAVGVAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEVSKDSRTVTVSHRPQPYRWSCERFSTSQVLCSQALSSGKHYWEVDTRNCSHWAVGVAS
100 110 120 130 140 150
340 350 360 370 380 390
pF1KE3 WEMSRDQVLGRTMDSCCVEWKGTSQLSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WEMSRDQVLGRTMDSCCVEWKGTSQLSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYS
160 170 180 190 200 210
400 410 420 430
pF1KE3 VDNQEKLLYECTISASSPLYPAFWLYGLHPGNYLIIKQVKV
:::::::::::::::::::::::::::::::::::::::::
XP_016 VDNQEKLLYECTISASSPLYPAFWLYGLHPGNYLIIKQVKV
220 230 240 250
>>NP_001171921 (OMIM: 611358,614192) E3 ubiquitin-protei (286 aa)
initn: 1558 init1: 1558 opt: 1558 Z-score: 1230.3 bits: 236.1 E(85289): 8.6e-62
Smith-Waterman score: 1558; 99.6% identity (99.6% similar) in 230 aa overlap (1-230:1-230)
10 20 30 40 50 60
pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
::::::::::::::::::::::::::::::::::::::::::::::: ::
NP_001 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGSLLPRLECSGTIT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 PDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFSTS
NP_001 AASISQAQENSWKPRLPPHAHCLTRATLHSGELLGLLSGPSIQPLT
250 260 270 280
>>NP_922921 (OMIM: 611358,614192) E3 ubiquitin-protein l (210 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 954.1 bits: 184.6 E(85289): 2.1e-46
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KE3 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_922 MAGLGLGSAVPVWLAEDDLGCIICQGLLDWPATLPCGHSFCRHCLEALWGARDARRWACP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_922 TCRQGAAQQPHLRKNTLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDL
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_922 ELQRVAVEKSITEVAQELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKENSWKPRL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 SMASPKLVTSDTAAGKIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCPL
NP_922 PPHAHCLTRATLHSGELLGLLSGPSIQPLT
190 200 210
>>NP_005073 (OMIM: 600453) E3 ubiquitin/ISG15 ligase TRI (630 aa)
initn: 472 init1: 155 opt: 306 Z-score: 252.2 bits: 56.3 E(85289): 2.6e-07
Smith-Waterman score: 309; 26.1% identity (54.3% similar) in 322 aa overlap (106-417:311-618)
80 90 100 110 120 130
pF1KE3 TLLQDLADKYRRAAREIQAGSDPAHCPCPGSSSLSSAAARPRRRPELQRVAVEKSITEVA
.:.: . ...: ::.. .: : .
NP_005 LLKKKSEIQTLKEEIEQSLTKRDEFEFLEKASKLRGISTKPVYIPEVE--LNHKLIKGIH
290 300 310 320 330
140 150 160 170 180 190
pF1KE3 QELTELVEHLVDIVRSLQNQRPLSESGPDNELSILGKAFSSGVDLSMASPKLVTSDTAAG
: .: ..: . . ::. : : . : :. ... : : :... .
NP_005 QSTIDLKNELKQCIGRLQEPTP-SSGDP-------GEHDPASTHKSTRPVKKVSKEEKKS
340 350 360 370 380 390
200 210 220 230 240 250
pF1KE3 KIRDILHDLEEIQEKLQESVTWKEAPEAQMQGELLEAPSSSSCP----LPDQSHPALRRA
: . . :: . .. . .. : : ..:: : : . ..
NP_005 KKPP---PVPALPSKLPTFGAPEQLVDLKQAGLEAAAKATSSHPNSTSLKAKVLETFLAK
400 410 420 430 440
260 270 280 290 300
pF1KE3 SR--FAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFS-TSQVLCSQAL
:: . .. :. .. .. .. .:. ...:.. :: :: .::. :::: .
NP_005 SRPELLEYYIKVILDYNTAHNKVALSECYTVASVAEMPQNYRPHPQRFTYCSQVLGLHCY
450 460 470 480 490 500
310 320 330 340 350 360
pF1KE3 SSGKHYWEVDTRNCSHWAVGVASWEMSR---DQVLGRTMDSCCVEWKGTSQLSAWHMVKE
..: :::::. .. . .::. :.: .. :::. : :::: .: ..:::: :
NP_005 KKGIHYWEVELQKNNFCGVGICYGSMNRQGPESRLGRNSASWCVEWFNT-KISAWHNNVE
510 520 530 540 550 560
370 380 390 400 410 420
pF1KE3 TVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAFWLYGLHPGNYL
.: : . ::. :: ..: . :..: .. .:.:. .. . ::::::..
NP_005 KTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLMYKFRVDFTEALYPAFWVFSAGATLSI
570 580 590 600 610 620
430
pF1KE3 IIKQVKV
NP_005 CSPK
630
>>XP_011517383 (OMIM: 609829) PREDICTED: FSD1-like prote (311 aa)
initn: 95 init1: 71 opt: 252 Z-score: 213.7 bits: 48.2 E(85289): 3.7e-05
Smith-Waterman score: 252; 32.4% identity (63.5% similar) in 148 aa overlap (279-419:130-276)
250 260 270 280 290 300
pF1KE3 RRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFS--TSQVLCSQ
. ..:. :: : : .::. . :: .
XP_011 CVEWDPTGGKGQESKIKGKENKGRSGTPSPKRTSVGSRPPAVRGSRDRFTGESYTVLGDT
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE3 ALSSGKHYWEVDT-RNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQ--LSAWHMV
:. ::.::::: . ..:. ..:::: ... . ::.: : :.. .. : ..: :
XP_011 AIESGQHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSWCIHVNNWLQNTFAAKHNN
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE3 KETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAF--WLYGLHP
: .: : .:.. ... :.:.::.. :...::: . ..:. :.: : ::
XP_011 KVKALDVTVPEKIGVFCDFDGGQLSFYDA-NSKQLLYSFKTKFTQPVLPGFMVWCGGLSL
220 230 240 250 260 270
430
pF1KE3 GNYLIIKQVKV
XP_011 STGMQVPSAVRTLQKSENGMTGSASSLNNVVTQ
280 290 300 310
>>XP_011517382 (OMIM: 609829) PREDICTED: FSD1-like prote (322 aa)
initn: 95 init1: 71 opt: 252 Z-score: 213.5 bits: 48.2 E(85289): 3.7e-05
Smith-Waterman score: 252; 32.4% identity (63.5% similar) in 148 aa overlap (279-419:141-287)
250 260 270 280 290 300
pF1KE3 RRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFS--TSQVLCSQ
. ..:. :: : : .::. . :: .
XP_011 QESKIKGKENKGSVHVTSLKKHTRSGTPSPKRTSVGSRPPAVRGSRDRFTGESYTVLGDT
120 130 140 150 160 170
310 320 330 340 350 360
pF1KE3 ALSSGKHYWEVDT-RNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQ--LSAWHMV
:. ::.::::: . ..:. ..:::: ... . ::.: : :.. .. : ..: :
XP_011 AIESGQHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSWCIHVNNWLQNTFAAKHNN
180 190 200 210 220 230
370 380 390 400 410 420
pF1KE3 KETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAF--WLYGLHP
: .: : .:.. ... :.:.::.. :...::: . ..:. :.: : ::
XP_011 KVKALDVTVPEKIGVFCDFDGGQLSFYDA-NSKQLLYSFKTKFTQPVLPGFMVWCGGLSL
240 250 260 270 280
430
pF1KE3 GNYLIIKQVKV
XP_011 STGMQVPSAVRTLQKSENGMTGSASSLNNVVTQ
290 300 310 320
>>XP_016870675 (OMIM: 609829) PREDICTED: FSD1-like prote (322 aa)
initn: 95 init1: 71 opt: 252 Z-score: 213.5 bits: 48.2 E(85289): 3.7e-05
Smith-Waterman score: 252; 32.4% identity (63.5% similar) in 148 aa overlap (279-419:141-287)
250 260 270 280 290 300
pF1KE3 RRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYRWSCERFS--TSQVLCSQ
. ..:. :: : : .::. . :: .
XP_016 QESKIKGKENKGSVHVTSLKKHTRSGTPSPKRTSVGSRPPAVRGSRDRFTGESYTVLGDT
120 130 140 150 160 170
310 320 330 340 350 360
pF1KE3 ALSSGKHYWEVDT-RNCSHWAVGVASWEMSRDQVLGRTMDSCCVEWKGTSQ--LSAWHMV
:. ::.::::: . ..:. ..:::: ... . ::.: : :.. .. : ..: :
XP_016 AIESGQHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSWCIHVNNWLQNTFAAKHNN
180 190 200 210 220 230
370 380 390 400 410 420
pF1KE3 KETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISASSPLYPAF--WLYGLHP
: .: : .:.. ... :.:.::.. :...::: . ..:. :.: : ::
XP_016 KVKALDVTVPEKIGVFCDFDGGQLSFYDA-NSKQLLYSFKTKFTQPVLPGFMVWCGGLSL
240 250 260 270 280
430
pF1KE3 GNYLIIKQVKV
XP_016 STGMQVPSAVRTLQKSENGMTGSASSLNNVVTQ
290 300 310 320
>>NP_001274120 (OMIM: 609829) FSD1-like protein isoform (508 aa)
initn: 127 init1: 71 opt: 254 Z-score: 212.8 bits: 48.7 E(85289): 4.1e-05
Smith-Waterman score: 254; 30.3% identity (61.8% similar) in 165 aa overlap (262-419:310-473)
240 250 260 270 280 290
pF1KE3 APSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCSLEVSKDSRTVTVSHRPQPYR
. .. ::. . . . ..:. :: :
NP_001 NLKVEDTCVEWDPTGGKGQESKIKGKENKGSVHVTSLKKHTSGTPSPKRTSVGSRPPAVR
280 290 300 310 320 330
300 310 320 330 340
pF1KE3 WSCERFS--TSQVLCSQALSSGKHYWEVDT-RNCSHWAVGVASWEMSRDQVLGRTMDSCC
: .::. . :: . :. ::.::::: . ..:. ..:::: ... . ::.: : :
NP_001 GSRDRFTGESYTVLGDTAIESGQHYWEVKAQKDCKSYSVGVAYKTLGKFDQLGKTNTSWC
340 350 360 370 380 390
350 360 370 380 390 400
pF1KE3 VEWKGTSQ--LSAWHMVKETVLGSDRPGVVGIWLNLEEGKLAFYSVDNQEKLLYECTISA
.. .. : ..: : : .: : .:.. ... :.:.::.. :...::: .
NP_001 IHVNNWLQNTFAAKHNNKVKALDVTVPEKIGVFCDFDGGQLSFYDA-NSKQLLYSFKTKF
400 410 420 430 440 450
410 420 430
pF1KE3 SSPLYPAF--WLYGLHPGNYLIIKQVKV
..:. :.: : ::
NP_001 TQPVLPGFMVWCGGLSLSTGMQVPSAVRTLQKSENGMTGSASSLNNVVTQ
460 470 480 490 500
432 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:35:04 2016 done: Sat Nov 5 23:35:06 2016
Total Scan time: 10.370 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]