FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3185, 425 aa
  1>>>pF1KE3185 425 - 425 aa - 425 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5298+/-0.00085; mu= 15.7660+/- 0.051
 mean_var=64.1982+/-12.736, 0's: 0 Z-trim(105.8): 23  B-trim: 0 in 0/51
 Lambda= 0.160071
 statistics sampled from 8625 (8642) to 8625 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.64), E-opt: 0.2 (0.265), width:  16
 Scan time:  2.260

The best scores are:                                      opt bits E(32554)
CCDS7964.1 CLP1 gene_id:10978|Hs108|chr11          ( 425) 2801 655.7 2.4e-188
CCDS44600.1 CLP1 gene_id:10978|Hs108|chr11         ( 361) 1502 355.7 4.3e-98


>>CCDS7964.1 CLP1 gene_id:10978|Hs108|chr11               (425 aa)
 initn: 2801 init1: 2801 opt: 2801  Z-score: 3494.7  bits: 655.7 E(32554): 2.4e-188
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KE3 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE3 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE3 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE3 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
              370       380       390       400       410       420

            
pF1KE3 FMDLK
       :::::
CCDS79 FMDLK
            

>>CCDS44600.1 CLP1 gene_id:10978|Hs108|chr11              (361 aa)
 initn: 2369 init1: 1492 opt: 1502  Z-score: 1874.6  bits: 355.7 E(32554): 4.3e-98
Smith-Waterman score: 2241; 84.9% identity (84.9% similar) in 425 aa overlap (1-425:1-361)

               10        20        30        40        50        60
pF1KE3 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLTGMAEIFGTELTRNKKFTFDAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AKVAVFTWHGCSVQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
       ::::::::::::::::::                                          
CCDS44 GPTDVGKSTVCRLLLNYA------------------------------------------
              130                                                  

              190       200       210       220       230       240
pF1KE3 QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
                             ::::::::::::::::::::::::::::::::::::::
CCDS44 ----------------------ITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
                            140       150       160       170      

              250       260       270       280       290       300
pF1KE3 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
        180       190       200       210       220       230      

              310       320       330       340       350       360
pF1KE3 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
        240       250       260       270       280       290      

              370       380       390       400       410       420
pF1KE3 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
        300       310       320       330       340       350      

            
pF1KE3 FMDLK
       :::::
CCDS44 FMDLK
        360 




425 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 01:38:56 2016 done: Sun Nov  6 01:38:56 2016
 Total Scan time:  2.260 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]