Result of FASTA (omim) for
pFN21AE3183
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3183, 422 aa
1>>>pF1KE3183 422 - 422 aa - 422 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4327+/-0.000328; mu= 11.5045+/- 0.021
mean_var=203.7824+/-39.608, 0's: 0 Z-trim(122.8): 11 B-trim: 93 in 1/55
Lambda= 0.089844
statistics sampled from 41635 (41648) to 41635 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.488), width: 16
Scan time: 9.370
The best scores are: opt bits E(85289)
NP_775740 (OMIM: 612501) ubiquitin-conjugating enz ( 375) 1711 233.7 6e-61
NP_001138807 (OMIM: 612501) ubiquitin-conjugating ( 359) 1652 226.0 1.2e-58
NP_001271311 (OMIM: 612501) ubiquitin-conjugating ( 340) 1365 188.8 1.8e-47
XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-c ( 314) 1219 169.9 8.3e-42
XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-c ( 298) 1160 162.2 1.6e-39
XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-c ( 279) 873 125.0 2.4e-28
XP_011520530 (OMIM: 612501) PREDICTED: ubiquitin-c ( 198) 652 96.1 8.2e-20
XP_006720833 (OMIM: 612501) PREDICTED: ubiquitin-c ( 235) 652 96.2 9.1e-20
XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-c ( 261) 634 93.9 4.9e-19
XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-c ( 296) 634 94.0 5.4e-19
NP_001138633 (OMIM: 615832) ubiquitin-conjugating ( 161) 605 90.0 4.8e-18
>>NP_775740 (OMIM: 612501) ubiquitin-conjugating enzyme (375 aa)
initn: 1543 init1: 1355 opt: 1711 Z-score: 1215.2 bits: 233.7 E(85289): 6e-61
Smith-Waterman score: 1831; 74.1% identity (86.0% similar) in 386 aa overlap (41-422:6-375)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
NP_775 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. : .:: ::: :. .:::::::::. ::: :.:.::::.
NP_775 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
.::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. : : :.:.::
NP_775 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
90 100 110 120 130
190 200 210 220 230 240
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
.:.:: : :: ::::::::::::: ::::::.:: ::::::::::.:.::::.:::::
NP_775 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAV
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
::::::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.:::::
NP_775 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQIL
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE3 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
::::: ..::::::::::::::::::::: :::::::::::::.::::::::::::::::
NP_775 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE3 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
:::::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
NP_775 ESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
320 330 340 350 360 370
>>NP_001138807 (OMIM: 612501) ubiquitin-conjugating enzy (359 aa)
initn: 1491 init1: 1355 opt: 1652 Z-score: 1174.1 bits: 226.0 E(85289): 1.2e-58
Smith-Waterman score: 1652; 71.6% identity (84.4% similar) in 366 aa overlap (60-422:2-359)
30 40 50 60 70 80
pF1KE3 GPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGP
:. : ..: :.. . . : :
NP_001 MRMDSLTEEKLECRLWCCLSDPSPPGLAARC
10 20 30
90 100 110 120 130 140
pF1KE3 HLPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHL
. :. ::. .: ::::. ::: :.:.::::..::::: : :. :.:: :.:
NP_001 CVLERSIVPS--LR-----QESYPSSSPIWFVDSEDPNLTSVLERLEDTKN-NNLLRQQL
40 50 60 70 80
150 160 170 180 190 200
pF1KE3 KRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSEDEDEE--MPEDTEDLDHYEM
: .: .::.:::::.: ::::::::::. : : :.:.::.:.:: : :: ::::::::
NP_001 KWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEM
90 100 110 120 130 140
210 220 230 240 250 260
pF1KE3 KEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRS
::::: ::::::.:: ::::::::::.:.::::.:::::::::::.:::::::::::::
NP_001 KEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRS
150 160 170 180 190 200
270 280 290 300 310 320
pF1KE3 QSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFP
::.: : :.:::.:::::::.::: ::: :: ::.:::::::::: ..::::::::::::
NP_001 QSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP
210 220 230 240 250 260
330 340 350 360 370 380
pF1KE3 FDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQF
::::::::: :::::::::::::.:::::::::::::::::::::::.::::::::::::
NP_001 FDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQF
270 280 290 300 310 320
390 400 410 420
pF1KE3 GANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
::::.::.:.::::::.:.:::::::::::::::::
NP_001 GANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
330 340 350
>>NP_001271311 (OMIM: 612501) ubiquitin-conjugating enzy (340 aa)
initn: 1651 init1: 1355 opt: 1365 Z-score: 973.4 bits: 188.8 E(85289): 1.8e-47
Smith-Waterman score: 1608; 68.1% identity (79.4% similar) in 383 aa overlap (41-422:6-340)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
NP_001 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. : .:: ::: :. .:::::::::. ::: :.:.::::.
NP_001 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSED
.::::: : :..: :. .:. :.:. :.
NP_001 SVLERLEDTKNNN----------------------------LNGT--TEEVTSEE---EE
90 100
190 200 210 220 230 240
pF1KE3 EDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGS
:.::: :: ::::::::::::: ::::::.:: ::::::::::.:.::::.::::::::
NP_001 EEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGS
110 120 130 140 150 160
250 260 270 280 290 300
pF1KE3 VQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEK
:::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.::::::::
NP_001 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK
170 180 190 200 210 220
310 320 330 340 350 360
pF1KE3 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV
:: ..::::::::::::::::::::: :::::::::::::.:::::::::::::::::::
NP_001 EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV
230 240 250 260 270 280
370 380 390 400 410 420
pF1KE3 IMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
NP_001 IMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
290 300 310 320 330 340
>>XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-conju (314 aa)
initn: 1051 init1: 863 opt: 1219 Z-score: 871.5 bits: 169.9 E(85289): 8.3e-42
Smith-Waterman score: 1339; 69.5% identity (82.1% similar) in 308 aa overlap (41-344:6-297)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
XP_005 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. : .:: ::: :. .:::::::::. ::: :.:.::::.
XP_005 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
.::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. : : :.:.::
XP_005 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
90 100 110 120 130
190 200 210 220 230 240
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
.:.:: : :: ::::::::::::: ::::::.:: ::::::::::.:.::::.:::::
XP_005 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAV
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
::::::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.:::::
XP_005 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQIL
200 210 220 230 240 250
310 320 330 340 350 360
pF1KE3 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
::::: ..::::::::::::::::::::: :::::: :
XP_005 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD
260 270 280 290 300 310
370 380 390 400 410 420
pF1KE3 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
>>XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-conju (298 aa)
initn: 999 init1: 863 opt: 1160 Z-score: 830.5 bits: 162.2 E(85289): 1.6e-39
Smith-Waterman score: 1160; 66.0% identity (79.9% similar) in 288 aa overlap (60-344:2-281)
30 40 50 60 70 80
pF1KE3 GPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGP
:. : ..: :.. . . : :
XP_016 MRMDSLTEEKLECRLWCCLSDPSPPGLAARC
10 20 30
90 100 110 120 130 140
pF1KE3 HLPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHL
. :. ::. .: ::::. ::: :.:.::::..::::: : :..: :: :.:
XP_016 CVLERSIVPS--LR-----QESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNN-LLRQQL
40 50 60 70 80
150 160 170 180 190 200
pF1KE3 KRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSEDEDEE--MPEDTEDLDHYEM
: .: .::.:::::.: ::::::::::. : : :.:.::.:.:: : :: ::::::::
XP_016 KWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEM
90 100 110 120 130 140
210 220 230 240 250 260
pF1KE3 KEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRS
::::: ::::::.:: ::::::::::.:.::::.:::::::::::.:::::::::::::
XP_016 KEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRS
150 160 170 180 190 200
270 280 290 300 310 320
pF1KE3 QSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFP
::.: : :.:::.:::::::.::: ::: :: ::.:::::::::: ..::::::::::::
XP_016 QSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP
210 220 230 240 250 260
330 340 350 360 370 380
pF1KE3 FDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQF
::::::::: :::::: :
XP_016 FDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD
270 280 290
>>XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-conju (279 aa)
initn: 1159 init1: 863 opt: 873 Z-score: 629.8 bits: 125.0 E(85289): 2.4e-28
Smith-Waterman score: 1116; 62.0% identity (73.8% similar) in 305 aa overlap (41-344:6-262)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
XP_016 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. : .:: ::: :. .:::::::::. ::: :.:.::::.
XP_016 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSED
.::::: : :..: :. .:. :.:. :.
XP_016 SVLERLEDTKNNN----------------------------LNG--TTEEVTSEE---EE
90 100
190 200 210 220 230 240
pF1KE3 EDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGS
:.::: :: ::::::::::::: ::::::.:: ::::::::::.:.::::.::::::::
XP_016 EEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAVSGS
110 120 130 140 150 160
250 260 270 280 290 300
pF1KE3 VQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEK
:::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.::::::::
XP_016 VQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEK
170 180 190 200 210 220
310 320 330 340 350 360
pF1KE3 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV
:: ..::::::::::::::::::::: :::::: :
XP_016 EGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD
230 240 250 260 270
370 380 390 400 410 420
pF1KE3 IMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
>>XP_011520530 (OMIM: 612501) PREDICTED: ubiquitin-conju (198 aa)
initn: 484 init1: 296 opt: 652 Z-score: 476.7 bits: 96.1 E(85289): 8.2e-20
Smith-Waterman score: 772; 62.3% identity (77.3% similar) in 207 aa overlap (41-243:6-196)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
XP_011 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. :. :: ::: :. .:::::::::. ::: :.:.::::.
XP_011 CQFLVPQQGS--------PHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
.::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. : : :.:.::
XP_011 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
90 100 110 120 130
190 200 210 220 230 240
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
.:.:: : :: ::::::::::::: ::::::.:: ::::::::::.:.::::.::
XP_011 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNSY
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
>>XP_006720833 (OMIM: 612501) PREDICTED: ubiquitin-conju (235 aa)
initn: 520 init1: 296 opt: 652 Z-score: 475.8 bits: 96.2 E(85289): 9.1e-20
Smith-Waterman score: 772; 62.3% identity (77.3% similar) in 207 aa overlap (41-243:6-196)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
XP_006 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. :. :: ::: :. .:::::::::. ::: :.:.::::.
XP_006 CQFLVPQQGS--------PHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
.::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. : : :.:.::
XP_006 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
90 100 110 120 130
190 200 210 220 230 240
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
.:.:: : :: ::::::::::::: ::::::.:: ::::::::::.:.::::.::
XP_006 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNDNF
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
XP_006 PFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD
200 210 220 230
>>XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-conju (261 aa)
initn: 967 init1: 634 opt: 634 Z-score: 462.7 bits: 93.9 E(85289): 4.9e-19
Smith-Waterman score: 1014; 51.2% identity (60.3% similar) in 383 aa overlap (41-422:6-261)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
XP_016 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. : .:: ::: :. .:::::::::. ::: :.:.::::.
XP_016 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSED
.::::: : :..: :. .:. :.:. :.
XP_016 SVLERLEDTKNNN----------------------------LNGT--TEEVTSEE---EE
90 100
190 200 210 220 230 240
pF1KE3 EDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAVSGS
:.::: :: ::::::::::::: ::::::.:: ::::::::::.:.::::.::
XP_016 EEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLN------
110 120 130 140 150 160
250 260 270 280 290 300
pF1KE3 VQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEK
XP_016 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE3 EGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESV
::::::::::::: :::::::::::::.:::::::::::::::::::
XP_016 -------------DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESV
170 180 190 200
370 380 390 400 410 420
pF1KE3 IMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
XP_016 IMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
210 220 230 240 250 260
>>XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-conju (296 aa)
initn: 971 init1: 634 opt: 634 Z-score: 462.0 bits: 94.0 E(85289): 5.4e-19
Smith-Waterman score: 1237; 57.3% identity (67.1% similar) in 386 aa overlap (41-422:6-296)
20 30 40 50 60 70
pF1KE3 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
:. :::.: ::: ..::::::.: ::::
XP_005 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
10 20 30
80 90 100 110 120
pF1KE3 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
:.::. : .:: ::: :. .:::::::::. ::: :.:.::::.
XP_005 CQFLVPQQG--------SPHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
40 50 60 70 80
130 140 150 160 170 180
pF1KE3 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
.::::: : :. :.:: :.:: .: .::.:::::.: ::::::::::. : : :.:.::
XP_005 SVLERLEDTKN-NNLLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
90 100 110 120 130
190 200 210 220 230 240
pF1KE3 DEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
.:.:: : :: ::::::::::::: ::::::.:: ::::::::::.:.::::.::
XP_005 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLN---
140 150 160 170 180 190
250 260 270 280 290 300
pF1KE3 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
XP_005 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE3 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
::::::::::::: :::::::::::::.::::::::::::::::
XP_005 ----------------DNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI
200 210 220 230 240
370 380 390 400 410 420
pF1KE3 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
:::::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
XP_005 ESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
250 260 270 280 290
422 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:53:34 2016 done: Sun Nov 6 18:53:36 2016
Total Scan time: 9.370 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]