FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3168, 191 aa
  1>>>pF1KE3168 191 - 191 aa - 191 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1225+/-0.000631; mu= 13.9462+/- 0.038
 mean_var=60.5156+/-12.150, 0's: 0 Z-trim(110.5): 18  B-trim: 43 in 1/47
 Lambda= 0.164870
 statistics sampled from 11664 (11681) to 11664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.359), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS6885.1 PIP5KL1 gene_id:138429|Hs108|chr9       ( 191) 1293 315.3 1.4e-86
CCDS48030.1 PIP5KL1 gene_id:138429|Hs108|chr9      ( 394) 1293 315.5 2.7e-86


>>CCDS6885.1 PIP5KL1 gene_id:138429|Hs108|chr9            (191 aa)
 initn: 1293 init1: 1293 opt: 1293  Z-score: 1667.6  bits: 315.3 E(32554): 1.4e-86
Smith-Waterman score: 1293; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)

               10        20        30        40        50        60
pF1KE3 MQSVFYPAGRISERYDIKGCEVSRWVDPAPEGSPLVLVLKDLNFQGKTINLGPQRSWFLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MQSVFYPAGRISERYDIKGCEVSRWVDPAPEGSPLVLVLKDLNFQGKTINLGPQRSWFLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 QMELDTTFLRELNVLDYSLLIAFQRLHEDERGPGSSLIFRTARSVQGAQSPEESRAQNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 QMELDTTFLRELNVLDYSLLIAFQRLHEDERGPGSSLIFRTARSVQGAQSPEESRAQNRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 LLPDAPNALHILDGPEQRYFLGVVDLATVYGLRKRLEHLWKTLRYPGRTFSTVSPARYAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 LLPDAPNALHILDGPEQRYFLGVVDLATVYGLRKRLEHLWKTLRYPGRTFSTVSPARYAR
              130       140       150       160       170       180

              190 
pF1KE3 RLCQWVEAHTE
       :::::::::::
CCDS68 RLCQWVEAHTE
              190 

>>CCDS48030.1 PIP5KL1 gene_id:138429|Hs108|chr9           (394 aa)
 initn: 1293 init1: 1293 opt: 1293  Z-score: 1662.8  bits: 315.5 E(32554): 2.7e-86
Smith-Waterman score: 1293; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:204-394)

                                             10        20        30
pF1KE3                               MQSVFYPAGRISERYDIKGCEVSRWVDPAP
                                     ::::::::::::::::::::::::::::::
CCDS48 LQRHPHSLLARLLGVHSLRVDRGKKTYFIVMQSVFYPAGRISERYDIKGCEVSRWVDPAP
           180       190       200       210       220       230   

               40        50        60        70        80        90
pF1KE3 EGSPLVLVLKDLNFQGKTINLGPQRSWFLRQMELDTTFLRELNVLDYSLLIAFQRLHEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EGSPLVLVLKDLNFQGKTINLGPQRSWFLRQMELDTTFLRELNVLDYSLLIAFQRLHEDE
           240       250       260       270       280       290   

              100       110       120       130       140       150
pF1KE3 RGPGSSLIFRTARSVQGAQSPEESRAQNRRLLPDAPNALHILDGPEQRYFLGVVDLATVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RGPGSSLIFRTARSVQGAQSPEESRAQNRRLLPDAPNALHILDGPEQRYFLGVVDLATVY
           300       310       320       330       340       350   

              160       170       180       190 
pF1KE3 GLRKRLEHLWKTLRYPGRTFSTVSPARYARRLCQWVEAHTE
       :::::::::::::::::::::::::::::::::::::::::
CCDS48 GLRKRLEHLWKTLRYPGRTFSTVSPARYARRLCQWVEAHTE
           360       370       380       390    




191 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:51:30 2016 done: Mon Nov  7 17:51:30 2016
 Total Scan time:  2.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]