Result of FASTA (ccds) for
pFN21AE3165
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3165, 387 aa
1>>>pF1KE3165 387 - 387 aa - 387 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1747+/-0.000699; mu= 17.1463+/- 0.042
mean_var=59.3347+/-12.059, 0's: 0 Z-trim(109.2): 41 B-trim: 562 in 1/48
Lambda= 0.166502
statistics sampled from 10700 (10730) to 10700 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.33), width: 16
Scan time: 2.780
The best scores are: opt bits E(32554)
CCDS3938.1 FBXO4 gene_id:26272|Hs108|chr5 ( 387) 2639 642.0 2.6e-184
CCDS75238.1 FBXO4 gene_id:26272|Hs108|chr5 ( 305) 2027 495.0 3.9e-140
CCDS3939.1 FBXO4 gene_id:26272|Hs108|chr5 ( 307) 2027 495.0 3.9e-140
>>CCDS3938.1 FBXO4 gene_id:26272|Hs108|chr5 (387 aa)
initn: 2639 init1: 2639 opt: 2639 Z-score: 3422.3 bits: 642.0 E(32554): 2.6e-184
Smith-Waterman score: 2639; 100.0% identity (100.0% similar) in 387 aa overlap (1-387:1-387)
10 20 30 40 50 60
pF1KE3 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ
310 320 330 340 350 360
370 380
pF1KE3 DTEAETLTGFLNGIEWILEEVESKRAR
:::::::::::::::::::::::::::
CCDS39 DTEAETLTGFLNGIEWILEEVESKRAR
370 380
>>CCDS75238.1 FBXO4 gene_id:26272|Hs108|chr5 (305 aa)
initn: 2027 init1: 2027 opt: 2027 Z-score: 2629.4 bits: 495.0 E(32554): 3.9e-140
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE3 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ
CCDS75 PGYRG
>>CCDS3939.1 FBXO4 gene_id:26272|Hs108|chr5 (307 aa)
initn: 2027 init1: 2027 opt: 2027 Z-score: 2629.4 bits: 495.0 E(32554): 3.9e-140
Smith-Waterman score: 2027; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KE3 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MAGSEPRSGTNSPPPPFSDWGRLEAAILSGWKTFWQSVSKERVARTTSREEVDEAASTLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 LEILKKPISEVTDGAFFDYMAVYRMCCPYTRRASKSSRPMYGAVTSFLHSLIIQNEPRFA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 MFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS39 RKERDRAREEHTSAVNKMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 HEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPWLVQ
CCDS39 KYSYVHF
387 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 03:26:51 2016 done: Sun Nov 6 03:26:51 2016
Total Scan time: 2.780 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]