Result of FASTA (omim) for
pFN21AE3156
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3156, 375 aa
1>>>pF1KE3156 375 - 375 aa - 375 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2388+/-0.000364; mu= 8.8099+/- 0.023
mean_var=146.5691+/-28.391, 0's: 0 Z-trim(119.3): 17 B-trim: 1227 in 2/55
Lambda= 0.105938
statistics sampled from 33196 (33214) to 33196 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.389), width: 16
Scan time: 9.580
The best scores are: opt bits E(85289)
NP_775740 (OMIM: 612501) ubiquitin-conjugating enz ( 375) 2504 394.1 2.8e-109
NP_001138807 (OMIM: 612501) ubiquitin-conjugating ( 359) 2086 330.2 4.6e-90
XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-c ( 314) 1976 313.3 4.8e-85
NP_001271311 (OMIM: 612501) ubiquitin-conjugating ( 340) 1614 258.0 2.3e-68
XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-c ( 298) 1558 249.4 7.8e-66
XP_011520530 (OMIM: 612501) PREDICTED: ubiquitin-c ( 198) 1316 212.3 7.8e-55
XP_006720833 (OMIM: 612501) PREDICTED: ubiquitin-c ( 235) 1316 212.4 8.9e-55
XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-c ( 296) 1316 212.4 1.1e-54
XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-c ( 279) 1086 177.3 3.9e-44
XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-c ( 261) 686 116.1 9.3e-26
NP_001138633 (OMIM: 615832) ubiquitin-conjugating ( 161) 566 97.6 2.1e-20
>>NP_775740 (OMIM: 612501) ubiquitin-conjugating enzyme (375 aa)
initn: 2504 init1: 2504 opt: 2504 Z-score: 2082.9 bits: 394.1 E(85289): 2.8e-109
Smith-Waterman score: 2504; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
310 320 330 340 350 360
370
pF1KE3 IHEKNGWYTPPKEDG
:::::::::::::::
NP_775 IHEKNGWYTPPKEDG
370
>>NP_001138807 (OMIM: 612501) ubiquitin-conjugating enzy (359 aa)
initn: 2086 init1: 2086 opt: 2086 Z-score: 1737.9 bits: 330.2 E(85289): 4.6e-90
Smith-Waterman score: 2093; 90.0% identity (92.8% similar) in 361 aa overlap (25-375:2-359)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
:. : ..:.:. : ..: :: :. .: .
NP_001 MRMDSLTEEKLECR-LWCCLSDPS--PPGLAARCCVL
10 20 30
70 80 90 100 110
pF1KE3 E----------SYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLY
: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERSIVPSLRQESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLY
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE3 NLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKS
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 EDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE3 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE3 VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLAR
280 290 300 310 320 330
360 370
pF1KE3 AQQSYNSIVQIHEKNGWYTPPKEDG
:::::::::::::::::::::::::
NP_001 AQQSYNSIVQIHEKNGWYTPPKEDG
340 350
>>XP_005254844 (OMIM: 612501) PREDICTED: ubiquitin-conju (314 aa)
initn: 1976 init1: 1976 opt: 1976 Z-score: 1647.9 bits: 313.3 E(85289): 4.8e-85
Smith-Waterman score: 1976; 99.7% identity (99.7% similar) in 297 aa overlap (1-297:1-297)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_005 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
XP_005 KGRWLNVLTVVCLD
310
>>NP_001271311 (OMIM: 612501) ubiquitin-conjugating enzy (340 aa)
initn: 2239 init1: 1610 opt: 1614 Z-score: 1348.4 bits: 258.0 E(85289): 2.3e-68
Smith-Waterman score: 2173; 90.7% identity (90.7% similar) in 375 aa overlap (1-375:1-340)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::
NP_001 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNL--------------------------
70 80 90
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ---------NGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
100 110 120 130 140
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
270 280 290 300 310 320
370
pF1KE3 IHEKNGWYTPPKEDG
:::::::::::::::
NP_001 IHEKNGWYTPPKEDG
330 340
>>XP_016878215 (OMIM: 612501) PREDICTED: ubiquitin-conju (298 aa)
initn: 1558 init1: 1558 opt: 1558 Z-score: 1302.9 bits: 249.4 E(85289): 7.8e-66
Smith-Waterman score: 1565; 86.9% identity (90.5% similar) in 283 aa overlap (25-297:2-281)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
:. : ..:.:. : ..: :: :. .: .
XP_016 MRMDSLTEEKLECR-LWCCLSDPS--PPGLAARCCVL
10 20 30
70 80 90 100 110
pF1KE3 E----------SYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLY
: :::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERSIVPSLRQESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLY
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE3 NLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKS
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 EDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE3 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE3 VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLAR
::::: :
XP_016 VLSGGLVHPSKGRWLNVLTVVCLD
280 290
>>XP_011520530 (OMIM: 612501) PREDICTED: ubiquitin-conju (198 aa)
initn: 1316 init1: 1316 opt: 1316 Z-score: 1105.5 bits: 212.3 E(85289): 7.8e-55
Smith-Waterman score: 1316; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::
XP_011 AILEKIRKTQRQDHLNSY
190
>>XP_006720833 (OMIM: 612501) PREDICTED: ubiquitin-conju (235 aa)
initn: 1316 init1: 1316 opt: 1316 Z-score: 1104.4 bits: 212.4 E(85289): 8.9e-55
Smith-Waterman score: 1316; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::
XP_006 AILEKIRKTQRQDHLNDNFPFDPPFVRVVLPVLSGGLVHPSKGRWLNVLTVVCLD
190 200 210 220 230
>>XP_005254845 (OMIM: 612501) PREDICTED: ubiquitin-conju (296 aa)
initn: 1316 init1: 1316 opt: 1316 Z-score: 1103.1 bits: 212.4 E(85289): 1.1e-54
Smith-Waterman score: 1825; 78.9% identity (78.9% similar) in 375 aa overlap (1-375:1-296)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::
XP_005 AILEKIRKTQRQDHLN--------------------------------------------
190
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
:::::::::::::::::::::::::
XP_005 -----------------------------------DNFPFDPPFVRVVLPVLSGGYVLGG
200 210 220
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
230 240 250 260 270 280
370
pF1KE3 IHEKNGWYTPPKEDG
:::::::::::::::
XP_005 IHEKNGWYTPPKEDG
290
>>XP_016878216 (OMIM: 612501) PREDICTED: ubiquitin-conju (279 aa)
initn: 1711 init1: 1082 opt: 1086 Z-score: 913.4 bits: 177.3 E(85289): 3.9e-44
Smith-Waterman score: 1645; 87.9% identity (87.9% similar) in 297 aa overlap (1-297:1-262)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::
XP_016 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNL--------------------------
70 80 90
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ---------NGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
100 110 120 130 140
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_016 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGLVHPS
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
XP_016 KGRWLNVLTVVCLD
270
>>XP_016878217 (OMIM: 612501) PREDICTED: ubiquitin-conju (261 aa)
initn: 1413 init1: 678 opt: 686 Z-score: 583.4 bits: 116.1 E(85289): 9.3e-26
Smith-Waterman score: 1494; 69.6% identity (69.6% similar) in 375 aa overlap (1-375:1-261)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::
XP_016 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNL--------------------------
70 80 90
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ---------NGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
100 110 120 130 140
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::
XP_016 AILEKIRKTQRQDHLN--------------------------------------------
150 160
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
:::::::::::::::::::::::::
XP_016 -----------------------------------DNFPFDPPFVRVVLPVLSGGYVLGG
170 180
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
190 200 210 220 230 240
370
pF1KE3 IHEKNGWYTPPKEDG
:::::::::::::::
XP_016 IHEKNGWYTPPKEDG
250 260
375 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:11:14 2016 done: Sun Nov 6 14:11:16 2016
Total Scan time: 9.580 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]