Result of FASTA (ccds) for
pFN21AE3156
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE3156, 375 aa
1>>>pF1KE3156 375 - 375 aa - 375 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8926+/-0.000868; mu= 10.8422+/- 0.053
mean_var=136.2301+/-26.963, 0's: 0 Z-trim(111.8): 24 B-trim: 302 in 1/52
Lambda= 0.109885
statistics sampled from 12628 (12642) to 12628 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.388), width: 16
Scan time: 2.800
The best scores are: opt bits E(32554)
CCDS10286.1 UBE2Q2 gene_id:92912|Hs108|chr15 ( 375) 2504 408.1 6.6e-114
CCDS45309.1 UBE2Q2 gene_id:92912|Hs108|chr15 ( 359) 2086 341.8 5.7e-94
CCDS1069.1 UBE2Q1 gene_id:55585|Hs108|chr1 ( 422) 1711 282.4 5.1e-76
CCDS66839.1 UBE2Q2 gene_id:92912|Hs108|chr15 ( 340) 1614 266.9 1.8e-71
CCDS47189.1 UBE2QL1 gene_id:134111|Hs108|chr5 ( 161) 566 100.5 1.1e-21
>>CCDS10286.1 UBE2Q2 gene_id:92912|Hs108|chr15 (375 aa)
initn: 2504 init1: 2504 opt: 2504 Z-score: 2158.4 bits: 408.1 E(32554): 6.6e-114
Smith-Waterman score: 2504; 100.0% identity (100.0% similar) in 375 aa overlap (1-375:1-375)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
310 320 330 340 350 360
370
pF1KE3 IHEKNGWYTPPKEDG
:::::::::::::::
CCDS10 IHEKNGWYTPPKEDG
370
>>CCDS45309.1 UBE2Q2 gene_id:92912|Hs108|chr15 (359 aa)
initn: 2086 init1: 2086 opt: 2086 Z-score: 1800.6 bits: 341.8 E(32554): 5.7e-94
Smith-Waterman score: 2093; 90.0% identity (92.8% similar) in 361 aa overlap (25-375:2-359)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
:. : ..:.:. : ..: :: :. .: .
CCDS45 MRMDSLTEEKLECR-LWCCLSDPS--PPGLAARCCVL
10 20 30
70 80 90 100 110
pF1KE3 E----------SYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLY
: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ERSIVPSLRQESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLY
40 50 60 70 80 90
120 130 140 150 160 170
pF1KE3 NLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKS
100 110 120 130 140 150
180 190 200 210 220 230
pF1KE3 EDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVE
160 170 180 190 200 210
240 250 260 270 280 290
pF1KE3 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP
220 230 240 250 260 270
300 310 320 330 340 350
pF1KE3 VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLAR
280 290 300 310 320 330
360 370
pF1KE3 AQQSYNSIVQIHEKNGWYTPPKEDG
:::::::::::::::::::::::::
CCDS45 AQQSYNSIVQIHEKNGWYTPPKEDG
340 350
>>CCDS1069.1 UBE2Q1 gene_id:55585|Hs108|chr1 (422 aa)
initn: 1543 init1: 1355 opt: 1711 Z-score: 1478.3 bits: 282.4 E(32554): 5.1e-76
Smith-Waterman score: 1831; 74.1% identity (86.0% similar) in 386 aa overlap (6-375:41-422)
10 20 30
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELH
:. :::.: ::: ..::::::.: ::::
CCDS10 QPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELS
20 30 40 50 60 70
40 50 60 70 80
pF1KE3 CQFLVPQQGS--------PHSLPP-------PLTLHCNITESYPSSSPIWFVDSEDPNLT
:.::. :. :: ::: :. .:::::::::. ::: :.:.::::.
CCDS10 CEFLLAGAGGAGAGAAPGPH-LPPRGSVPGDPVRIHCNITESYPAVPPIWSVESDDPNLA
80 90 100 110 120
90 100 110 120 130
pF1KE3 SVLERLEDTKNNN-LLRQQLKWLICELCSLYNLPKHLDVEMLDQPLPTGQNGTTEEVTSE
.::::: : :..: :: :.:: .: .::.:::::.: ::::::::::. : : :.:.::
CCDS10 AVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC-TQEDVSSE
130 140 150 160 170 180
140 150 160 170 180 190
pF1KE3 EEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENLAILEKIRKTQRQDHLNGAV
.:.: :: :: ::::::::::::: ::::::.:: ::::::::::.:.::::.:::::
CCDS10 DEDE--EMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV
190 200 210 220 230 240
200 210 220 230 240 250
pF1KE3 SGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQIL
::::::.:::::::::::::::.: : :.:::.:::::::.::: ::: :: ::.:::::
CCDS10 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL
250 260 270 280 290 300
260 270 280 290 300 310
pF1KE3 KEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSI
::::: ..::::::::::::::::::::: :::::::::::::.::::::::::::::::
CCDS10 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI
310 320 330 340 350 360
320 330 340 350 360 370
pF1KE3 ESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQIHEKNGWYTPPKEDG
:::::::.::::::::::::::::.::.:.::::::.:.:::::::::::::::::
CCDS10 ESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG
370 380 390 400 410 420
>>CCDS66839.1 UBE2Q2 gene_id:92912|Hs108|chr15 (340 aa)
initn: 2239 init1: 1610 opt: 1614 Z-score: 1396.5 bits: 266.9 E(32554): 1.8e-71
Smith-Waterman score: 2173; 90.7% identity (90.7% similar) in 375 aa overlap (1-375:1-340)
10 20 30 40 50 60
pF1KE3 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSVSGLKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGSPHSLPPPLTLHCNIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE3 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNLLRQQLKWLICELCSLYNLPKHLDVEM
::::::::::::::::::::::::::::::::::
CCDS66 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNNL--------------------------
70 80 90
130 140 150 160 170 180
pF1KE3 LDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ---------NGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKENL
100 110 120 130 140
190 200 210 220 230 240
pF1KE3 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWH
150 160 170 180 190 200
250 260 270 280 290 300
pF1KE3 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 VKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG
210 220 230 240 250 260
310 320 330 340 350 360
pF1KE3 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ
270 280 290 300 310 320
370
pF1KE3 IHEKNGWYTPPKEDG
:::::::::::::::
CCDS66 IHEKNGWYTPPKEDG
330 340
>>CCDS47189.1 UBE2QL1 gene_id:134111|Hs108|chr5 (161 aa)
initn: 590 init1: 326 opt: 566 Z-score: 503.0 bits: 100.5 E(32554): 1.1e-21
Smith-Waterman score: 566; 51.2% identity (78.6% similar) in 168 aa overlap (210-375:1-161)
180 190 200 210 220 230
pF1KE3 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW
::::.:: : .. . ::::...::.::
CCDS47 MKELQDIARLSDR---FISVELVDESLFDW
10 20
240 250 260 270 280 290
pF1KE3 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG
.:::..:: :: : .:.. . . :.::::..: :::::.:::.::. : : .::::
CCDS47 NVKLHQVDKDSVLWQDMK----ETNTEFILLNLTFPDNFPFSPPFMRVLSPRLENGYVLD
30 40 50 60 70 80
300 310 320 330 340 350
pF1KE3 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLAR--AQQSYNS
:::.:::::: .::::::..:.:. :. :.::::..:. :.:.. ...: :. ...:
CCDS47 GGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGRICRKAGKSKKSFSRKEAEATFKS
90 100 110 120 130 140
360 370
pF1KE3 IVQIHEKNGWYTPPKEDG
.:. ::: :: ::: ::
CCDS47 LVKTHEKYGWVTPPVSDG
150 160
375 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:11:14 2016 done: Sun Nov 6 14:11:14 2016
Total Scan time: 2.800 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]